Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Limch1Q3UH68 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC24.29■■□□□ 1.48
Limch1Q3UH68 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Limch1Q3UH68 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Limch1Q3UH68 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
Limch1Q3UH68 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Limch1Q3UH68 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
Limch1Q3UH68 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Limch1Q3UH68 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Limch1Q3UH68 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
Limch1Q3UH68 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Limch1Q3UH68 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC24.28■■□□□ 1.48
Limch1Q3UH68 Gm43006-201ENSMUST00000197702 1602 ntBASIC24.28■■□□□ 1.48
Limch1Q3UH68 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
Limch1Q3UH68 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
Limch1Q3UH68 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
Limch1Q3UH68 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Limch1Q3UH68 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Limch1Q3UH68 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
Limch1Q3UH68 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
Limch1Q3UH68 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Limch1Q3UH68 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
Limch1Q3UH68 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC24.26■■□□□ 1.47
Limch1Q3UH68 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Limch1Q3UH68 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Limch1Q3UH68 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Limch1Q3UH68 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
Limch1Q3UH68 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Limch1Q3UH68 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Limch1Q3UH68 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC24.24■■□□□ 1.47
Limch1Q3UH68 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
Limch1Q3UH68 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Limch1Q3UH68 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
Limch1Q3UH68 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
Limch1Q3UH68 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC24.23■■□□□ 1.47
Limch1Q3UH68 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
Limch1Q3UH68 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC24.23■■□□□ 1.47
Limch1Q3UH68 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Limch1Q3UH68 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
Limch1Q3UH68 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC24.23■■□□□ 1.47
Limch1Q3UH68 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Limch1Q3UH68 Gm5913-201ENSMUST00000119397 1399 ntBASIC24.22■■□□□ 1.47
Limch1Q3UH68 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Limch1Q3UH68 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Limch1Q3UH68 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Limch1Q3UH68 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC24.22■■□□□ 1.47
Limch1Q3UH68 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC24.22■■□□□ 1.47
Limch1Q3UH68 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
Limch1Q3UH68 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Limch1Q3UH68 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
Limch1Q3UH68 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
Limch1Q3UH68 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC24.21■■□□□ 1.47
Limch1Q3UH68 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Limch1Q3UH68 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Limch1Q3UH68 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Limch1Q3UH68 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Limch1Q3UH68 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Limch1Q3UH68 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Limch1Q3UH68 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
Limch1Q3UH68 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
Limch1Q3UH68 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
Limch1Q3UH68 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC24.2■■□□□ 1.46
Limch1Q3UH68 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
Limch1Q3UH68 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Limch1Q3UH68 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Limch1Q3UH68 Gm13241-201ENSMUST00000094493 780 ntBASIC24.2■■□□□ 1.46
Limch1Q3UH68 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC24.2■■□□□ 1.46
Limch1Q3UH68 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC24.2■■□□□ 1.46
Limch1Q3UH68 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC24.2■■□□□ 1.46
Limch1Q3UH68 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Limch1Q3UH68 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Limch1Q3UH68 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Limch1Q3UH68 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
Limch1Q3UH68 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC24.19■■□□□ 1.46
Limch1Q3UH68 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Limch1Q3UH68 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Limch1Q3UH68 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC24.19■■□□□ 1.46
Limch1Q3UH68 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC24.19■■□□□ 1.46
Limch1Q3UH68 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC24.19■■□□□ 1.46
Limch1Q3UH68 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Limch1Q3UH68 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Limch1Q3UH68 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC24.18■■□□□ 1.46
Limch1Q3UH68 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC24.18■■□□□ 1.46
Limch1Q3UH68 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Limch1Q3UH68 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Limch1Q3UH68 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Limch1Q3UH68 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Limch1Q3UH68 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Limch1Q3UH68 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
Limch1Q3UH68 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC24.17■■□□□ 1.46
Limch1Q3UH68 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC24.17■■□□□ 1.46
Limch1Q3UH68 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC24.17■■□□□ 1.46
Limch1Q3UH68 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC24.17■■□□□ 1.46
Limch1Q3UH68 Gm40881-201ENSMUST00000223397 166 ntBASIC24.17■■□□□ 1.46
Limch1Q3UH68 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Limch1Q3UH68 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
Limch1Q3UH68 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Limch1Q3UH68 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
Limch1Q3UH68 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Limch1Q3UH68 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms