Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb3O54879 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb3O54879 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb3O54879 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
Hmgb3O54879 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb3O54879 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb3O54879 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb3O54879 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb3O54879 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
Hmgb3O54879 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb3O54879 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC17.11■□□□□ 0.33
Hmgb3O54879 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb3O54879 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb3O54879 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb3O54879 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Hmgb3O54879 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb3O54879 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Hmgb3O54879 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb3O54879 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb3O54879 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb3O54879 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb3O54879 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Hmgb3O54879 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb3O54879 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC17.1■□□□□ 0.33
Hmgb3O54879 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb3O54879 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb3O54879 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb3O54879 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Hmgb3O54879 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb3O54879 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
Hmgb3O54879 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Hmgb3O54879 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Hmgb3O54879 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Hmgb3O54879 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Hmgb3O54879 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Hmgb3O54879 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC17.09■□□□□ 0.33
Hmgb3O54879 Mir3960-201ENSMUST00000198213 73 ntBASIC17.09■□□□□ 0.33
Hmgb3O54879 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Hmgb3O54879 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Hmgb3O54879 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Hmgb3O54879 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Hmgb3O54879 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Hmgb3O54879 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Hmgb3O54879 Kdm3b-204ENSMUST00000224715 2032 ntBASIC17.08■□□□□ 0.33
Hmgb3O54879 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Hmgb3O54879 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Hmgb3O54879 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Hmgb3O54879 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
Hmgb3O54879 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Hmgb3O54879 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Hmgb3O54879 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Hmgb3O54879 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Hmgb3O54879 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Hmgb3O54879 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Hmgb3O54879 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Hmgb3O54879 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Hmgb3O54879 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Hmgb3O54879 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Hmgb3O54879 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Hmgb3O54879 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Hmgb3O54879 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC17.07■□□□□ 0.32
Hmgb3O54879 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Hmgb3O54879 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Hmgb3O54879 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Hmgb3O54879 Gm12818-201ENSMUST00000117562 1349 ntBASIC17.06■□□□□ 0.32
Hmgb3O54879 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Hmgb3O54879 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC17.06■□□□□ 0.32
Hmgb3O54879 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Hmgb3O54879 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Hmgb3O54879 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Hmgb3O54879 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Hmgb3O54879 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Hmgb3O54879 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Hmgb3O54879 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Hmgb3O54879 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Hmgb3O54879 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Hmgb3O54879 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Hmgb3O54879 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Hmgb3O54879 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Hmgb3O54879 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
Hmgb3O54879 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Hmgb3O54879 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC17.05■□□□□ 0.32
Hmgb3O54879 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Hmgb3O54879 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Hmgb3O54879 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb3O54879 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC17.04■□□□□ 0.32
Hmgb3O54879 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb3O54879 Gm9954-202ENSMUST00000198686 4725 ntBASIC17.04■□□□□ 0.32
Hmgb3O54879 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb3O54879 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Hmgb3O54879 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb3O54879 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb3O54879 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC17.04■□□□□ 0.32
Hmgb3O54879 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Hmgb3O54879 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb3O54879 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb3O54879 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb3O54879 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb3O54879 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb3O54879 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 18.7 ms