Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC21.33■■□□□ 1.01
Sdc4O35988 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Sdc4O35988 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC21.33■■□□□ 1.01
Sdc4O35988 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC21.33■■□□□ 1.01
Sdc4O35988 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
Sdc4O35988 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC21.33■■□□□ 1
Sdc4O35988 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC21.33■■□□□ 1
Sdc4O35988 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Sdc4O35988 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC21.32■■□□□ 1
Sdc4O35988 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Sdc4O35988 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Sdc4O35988 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Sdc4O35988 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC21.32■■□□□ 1
Sdc4O35988 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Sdc4O35988 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC21.32■■□□□ 1
Sdc4O35988 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC21.31■■□□□ 1
Sdc4O35988 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC21.31■■□□□ 1
Sdc4O35988 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Sdc4O35988 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC21.31■■□□□ 1
Sdc4O35988 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC21.31■■□□□ 1
Sdc4O35988 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC21.31■■□□□ 1
Sdc4O35988 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC21.31■■□□□ 1
Sdc4O35988 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Sdc4O35988 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC21.3■■□□□ 1
Sdc4O35988 Gm42418-201ENSMUST00000182010 1831 ntBASIC21.3■■□□□ 1
Sdc4O35988 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Sdc4O35988 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC21.3■■□□□ 1
Sdc4O35988 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC21.3■■□□□ 1
Sdc4O35988 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Sdc4O35988 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC21.3■■□□□ 1
Sdc4O35988 Gm7143-201ENSMUST00000222811 859 ntBASIC21.3■■□□□ 1
Sdc4O35988 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Sdc4O35988 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Sdc4O35988 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Sdc4O35988 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC21.29■■□□□ 1
Sdc4O35988 Gm9207-201ENSMUST00000198773 1115 ntBASIC21.29■■□□□ 1
Sdc4O35988 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC21.29■■□□□ 1
Sdc4O35988 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
Sdc4O35988 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Sdc4O35988 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
Sdc4O35988 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC21.28■■□□□ 1
Sdc4O35988 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Sdc4O35988 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC21.28■■□□□ 1
Sdc4O35988 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
Sdc4O35988 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC21.28■■□□□ 1
Sdc4O35988 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Sdc4O35988 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC21.27■■□□□ 1
Sdc4O35988 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
Sdc4O35988 AC164883.3-201ENSMUST00000227396 1774 ntBASIC21.27■■□□□ 1
Sdc4O35988 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
Sdc4O35988 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC21.27■■□□□ 1
Sdc4O35988 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Sdc4O35988 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Sdc4O35988 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Sdc4O35988 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Sdc4O35988 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Sdc4O35988 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Sdc4O35988 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Sdc4O35988 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Sdc4O35988 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Sdc4O35988 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Sdc4O35988 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Sdc4O35988 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Sdc4O35988 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Sdc4O35988 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sdc4O35988 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sdc4O35988 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sdc4O35988 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sdc4O35988 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Sdc4O35988 Gm27454-201ENSMUST00000185090 204 ntBASIC21.24■□□□□ 0.99
Sdc4O35988 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Sdc4O35988 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sdc4O35988 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sdc4O35988 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sdc4O35988 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sdc4O35988 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Sdc4O35988 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Sdc4O35988 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Sdc4O35988 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Sdc4O35988 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Sdc4O35988 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Sdc4O35988 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Sdc4O35988 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Sdc4O35988 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Sdc4O35988 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Sdc4O35988 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Sdc4O35988 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sdc4O35988 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Sdc4O35988 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC21.22■□□□□ 0.99
Sdc4O35988 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sdc4O35988 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC21.22■□□□□ 0.99
Sdc4O35988 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sdc4O35988 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Sdc4O35988 Gm10657-201ENSMUST00000193528 1031 ntBASIC21.22■□□□□ 0.99
Sdc4O35988 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Sdc4O35988 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Sdc4O35988 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sdc4O35988 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sdc4O35988 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Sdc4O35988 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 15.7 ms