Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC22.29■■□□□ 1.16
Nr1i3O35627 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
Nr1i3O35627 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Nr1i3O35627 Snhg20-203ENSMUST00000182811 2153 ntBASIC22.29■■□□□ 1.16
Nr1i3O35627 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
Nr1i3O35627 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Nr1i3O35627 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Nr1i3O35627 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Nr1i3O35627 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Nr1i3O35627 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC22.28■■□□□ 1.16
Nr1i3O35627 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Nr1i3O35627 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC22.28■■□□□ 1.16
Nr1i3O35627 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC22.28■■□□□ 1.16
Nr1i3O35627 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC22.28■■□□□ 1.16
Nr1i3O35627 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Nr1i3O35627 AC122428.2-201ENSMUST00000216321 1832 ntBASIC22.28■■□□□ 1.16
Nr1i3O35627 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Nr1i3O35627 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Nr1i3O35627 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Nr1i3O35627 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Nr1i3O35627 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC22.27■■□□□ 1.16
Nr1i3O35627 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.16
Nr1i3O35627 Gm16464-201ENSMUST00000117815 1095 ntBASIC22.27■■□□□ 1.16
Nr1i3O35627 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Nr1i3O35627 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Nr1i3O35627 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Nr1i3O35627 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Nr1i3O35627 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Nr1i3O35627 Cap2-205ENSMUST00000225824 1634 ntBASIC22.27■■□□□ 1.16
Nr1i3O35627 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.15
Nr1i3O35627 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
Nr1i3O35627 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Nr1i3O35627 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Nr1i3O35627 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Nr1i3O35627 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Nr1i3O35627 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
Nr1i3O35627 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
Nr1i3O35627 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Nr1i3O35627 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
Nr1i3O35627 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Nr1i3O35627 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
Nr1i3O35627 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC22.25■■□□□ 1.15
Nr1i3O35627 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Nr1i3O35627 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC22.25■■□□□ 1.15
Nr1i3O35627 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Nr1i3O35627 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Nr1i3O35627 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Nr1i3O35627 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Nr1i3O35627 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Nr1i3O35627 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
Nr1i3O35627 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
Nr1i3O35627 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Nr1i3O35627 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC22.24■■□□□ 1.15
Nr1i3O35627 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Nr1i3O35627 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Nr1i3O35627 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Nr1i3O35627 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Nr1i3O35627 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Nr1i3O35627 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Nr1i3O35627 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC22.23■■□□□ 1.15
Nr1i3O35627 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Nr1i3O35627 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
Nr1i3O35627 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Nr1i3O35627 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC22.22■■□□□ 1.15
Nr1i3O35627 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Nr1i3O35627 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Nr1i3O35627 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
Nr1i3O35627 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Nr1i3O35627 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Nr1i3O35627 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Nr1i3O35627 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC22.21■■□□□ 1.15
Nr1i3O35627 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
Nr1i3O35627 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
Nr1i3O35627 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Nr1i3O35627 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Nr1i3O35627 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC22.21■■□□□ 1.15
Nr1i3O35627 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Nr1i3O35627 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
Nr1i3O35627 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Nr1i3O35627 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
Nr1i3O35627 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
Nr1i3O35627 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Nr1i3O35627 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Nr1i3O35627 Gm43566-201ENSMUST00000196851 808 ntBASIC22.19■■□□□ 1.14
Nr1i3O35627 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC22.19■■□□□ 1.14
Nr1i3O35627 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Nr1i3O35627 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Nr1i3O35627 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
Nr1i3O35627 AC152827.1-201ENSMUST00000221143 2189 ntBASIC22.19■■□□□ 1.14
Nr1i3O35627 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Nr1i3O35627 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC22.18■■□□□ 1.14
Nr1i3O35627 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Nr1i3O35627 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Nr1i3O35627 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Nr1i3O35627 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Nr1i3O35627 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Nr1i3O35627 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Nr1i3O35627 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Nr1i3O35627 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC22.18■■□□□ 1.14
Nr1i3O35627 Gm5131-201ENSMUST00000212776 1238 ntBASIC22.18■■□□□ 1.14
Retrieved 100 of 76,532 protein–RNA pairs in 15.1 ms