Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC17.21■□□□□ 0.35
Chd6A3KFM7 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Chd6A3KFM7 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Chd6A3KFM7 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Chd6A3KFM7 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Chd6A3KFM7 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Chd6A3KFM7 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC17.21■□□□□ 0.35
Chd6A3KFM7 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC17.21■□□□□ 0.35
Chd6A3KFM7 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC17.21■□□□□ 0.35
Chd6A3KFM7 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC17.21■□□□□ 0.35
Chd6A3KFM7 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
Chd6A3KFM7 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC17.21■□□□□ 0.34
Chd6A3KFM7 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Chd6A3KFM7 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chd6A3KFM7 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Chd6A3KFM7 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chd6A3KFM7 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC17.2■□□□□ 0.34
Chd6A3KFM7 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chd6A3KFM7 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chd6A3KFM7 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Chd6A3KFM7 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC17.2■□□□□ 0.34
Chd6A3KFM7 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC17.2■□□□□ 0.34
Chd6A3KFM7 Gm9870-201ENSMUST00000063874 645 ntBASIC17.2■□□□□ 0.34
Chd6A3KFM7 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Chd6A3KFM7 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Chd6A3KFM7 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Chd6A3KFM7 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Chd6A3KFM7 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Chd6A3KFM7 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Chd6A3KFM7 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC17.19■□□□□ 0.34
Chd6A3KFM7 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Chd6A3KFM7 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Chd6A3KFM7 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC17.18■□□□□ 0.34
Chd6A3KFM7 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Chd6A3KFM7 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Chd6A3KFM7 Gm7160-202ENSMUST00000188519 1027 ntBASIC17.18■□□□□ 0.34
Chd6A3KFM7 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Chd6A3KFM7 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Chd6A3KFM7 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Chd6A3KFM7 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC17.17■□□□□ 0.34
Chd6A3KFM7 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Chd6A3KFM7 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Chd6A3KFM7 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Chd6A3KFM7 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Chd6A3KFM7 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
Chd6A3KFM7 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Chd6A3KFM7 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC17.16■□□□□ 0.34
Chd6A3KFM7 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC17.16■□□□□ 0.34
Chd6A3KFM7 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC17.16■□□□□ 0.34
Chd6A3KFM7 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Chd6A3KFM7 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Chd6A3KFM7 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Chd6A3KFM7 Gm10209-201ENSMUST00000203397 1607 ntBASIC17.16■□□□□ 0.34
Chd6A3KFM7 Smad6-203ENSMUST00000179458 273 ntBASIC17.15■□□□□ 0.34
Chd6A3KFM7 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Chd6A3KFM7 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Chd6A3KFM7 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Chd6A3KFM7 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Chd6A3KFM7 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC17.15■□□□□ 0.34
Chd6A3KFM7 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Chd6A3KFM7 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Chd6A3KFM7 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Chd6A3KFM7 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Chd6A3KFM7 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Chd6A3KFM7 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC17.14■□□□□ 0.33
Chd6A3KFM7 Gm10812-201ENSMUST00000099864 546 ntBASIC17.14■□□□□ 0.33
Chd6A3KFM7 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.33
Chd6A3KFM7 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Chd6A3KFM7 Gm13168-201ENSMUST00000121771 632 ntBASIC17.14■□□□□ 0.33
Chd6A3KFM7 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Chd6A3KFM7 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Chd6A3KFM7 Gm3807-201ENSMUST00000193520 1168 ntBASIC17.13■□□□□ 0.33
Chd6A3KFM7 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC17.13■□□□□ 0.33
Chd6A3KFM7 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Chd6A3KFM7 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Chd6A3KFM7 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Chd6A3KFM7 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Chd6A3KFM7 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Chd6A3KFM7 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Chd6A3KFM7 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Chd6A3KFM7 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Chd6A3KFM7 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC17.12■□□□□ 0.33
Chd6A3KFM7 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC17.12■□□□□ 0.33
Chd6A3KFM7 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Chd6A3KFM7 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC17.12■□□□□ 0.33
Chd6A3KFM7 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC17.12■□□□□ 0.33
Chd6A3KFM7 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Chd6A3KFM7 Gm37856-201ENSMUST00000191634 999 ntBASIC17.11■□□□□ 0.33
Chd6A3KFM7 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC17.11■□□□□ 0.33
Chd6A3KFM7 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chd6A3KFM7 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chd6A3KFM7 Gm13148-201ENSMUST00000118892 745 ntBASIC17.11■□□□□ 0.33
Chd6A3KFM7 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Chd6A3KFM7 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chd6A3KFM7 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Chd6A3KFM7 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Chd6A3KFM7 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chd6A3KFM7 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chd6A3KFM7 Gm20049-201ENSMUST00000219950 730 ntBASIC17.1■□□□□ 0.33
Chd6A3KFM7 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms