Protein–RNA interactions for Protein: A0A0B4J1H5

Trbv20, T cell receptor beta, variable 20 (Fragment), mousemouse

Predictions only

Length 111 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv20A0A0B4J1H5 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trbv20A0A0B4J1H5 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trbv20A0A0B4J1H5 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trbv20A0A0B4J1H5 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trbv20A0A0B4J1H5 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trbv20A0A0B4J1H5 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trbv20A0A0B4J1H5 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC18.52■□□□□ 0.56
Trbv20A0A0B4J1H5 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Trbv20A0A0B4J1H5 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trbv20A0A0B4J1H5 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trbv20A0A0B4J1H5 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trbv20A0A0B4J1H5 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trbv20A0A0B4J1H5 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trbv20A0A0B4J1H5 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trbv20A0A0B4J1H5 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trbv20A0A0B4J1H5 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trbv20A0A0B4J1H5 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trbv20A0A0B4J1H5 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Trbv20A0A0B4J1H5 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC18.52■□□□□ 0.55
Trbv20A0A0B4J1H5 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trbv20A0A0B4J1H5 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trbv20A0A0B4J1H5 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trbv20A0A0B4J1H5 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trbv20A0A0B4J1H5 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trbv20A0A0B4J1H5 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trbv20A0A0B4J1H5 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC18.51■□□□□ 0.55
Trbv20A0A0B4J1H5 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trbv20A0A0B4J1H5 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Trbv20A0A0B4J1H5 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trbv20A0A0B4J1H5 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Trbv20A0A0B4J1H5 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Trbv20A0A0B4J1H5 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trbv20A0A0B4J1H5 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trbv20A0A0B4J1H5 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trbv20A0A0B4J1H5 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trbv20A0A0B4J1H5 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trbv20A0A0B4J1H5 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trbv20A0A0B4J1H5 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC18.5■□□□□ 0.55
Trbv20A0A0B4J1H5 Gm5131-201ENSMUST00000212776 1238 ntBASIC18.5■□□□□ 0.55
Trbv20A0A0B4J1H5 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC18.5■□□□□ 0.55
Trbv20A0A0B4J1H5 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC18.5■□□□□ 0.55
Trbv20A0A0B4J1H5 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
Trbv20A0A0B4J1H5 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trbv20A0A0B4J1H5 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trbv20A0A0B4J1H5 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv20A0A0B4J1H5 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv20A0A0B4J1H5 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC18.49■□□□□ 0.55
Trbv20A0A0B4J1H5 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC18.49■□□□□ 0.55
Trbv20A0A0B4J1H5 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv20A0A0B4J1H5 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv20A0A0B4J1H5 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv20A0A0B4J1H5 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv20A0A0B4J1H5 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC18.49■□□□□ 0.55
Trbv20A0A0B4J1H5 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv20A0A0B4J1H5 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv20A0A0B4J1H5 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trbv20A0A0B4J1H5 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Trbv20A0A0B4J1H5 Gm43545-201ENSMUST00000196765 2779 ntBASIC18.48■□□□□ 0.55
Trbv20A0A0B4J1H5 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
Trbv20A0A0B4J1H5 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Trbv20A0A0B4J1H5 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
Trbv20A0A0B4J1H5 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC18.48■□□□□ 0.55
Trbv20A0A0B4J1H5 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
Trbv20A0A0B4J1H5 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trbv20A0A0B4J1H5 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trbv20A0A0B4J1H5 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trbv20A0A0B4J1H5 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trbv20A0A0B4J1H5 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
Trbv20A0A0B4J1H5 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trbv20A0A0B4J1H5 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trbv20A0A0B4J1H5 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trbv20A0A0B4J1H5 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trbv20A0A0B4J1H5 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trbv20A0A0B4J1H5 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trbv20A0A0B4J1H5 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Trbv20A0A0B4J1H5 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trbv20A0A0B4J1H5 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Trbv20A0A0B4J1H5 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trbv20A0A0B4J1H5 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trbv20A0A0B4J1H5 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Trbv20A0A0B4J1H5 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trbv20A0A0B4J1H5 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trbv20A0A0B4J1H5 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trbv20A0A0B4J1H5 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC18.46■□□□□ 0.55
Trbv20A0A0B4J1H5 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC18.45■□□□□ 0.54
Trbv20A0A0B4J1H5 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trbv20A0A0B4J1H5 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Trbv20A0A0B4J1H5 Nsd1-206ENSMUST00000224918 1001 ntBASIC18.45■□□□□ 0.54
Trbv20A0A0B4J1H5 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trbv20A0A0B4J1H5 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Trbv20A0A0B4J1H5 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trbv20A0A0B4J1H5 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC18.45■□□□□ 0.54
Trbv20A0A0B4J1H5 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trbv20A0A0B4J1H5 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trbv20A0A0B4J1H5 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trbv20A0A0B4J1H5 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trbv20A0A0B4J1H5 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trbv20A0A0B4J1H5 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
Trbv20A0A0B4J1H5 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trbv20A0A0B4J1H5 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 102.9 ms