Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cpsf3Q9QXK7 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cpsf3Q9QXK7 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Cpsf3Q9QXK7 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cpsf3Q9QXK7 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC12.91□□□□□ -0.34
Cpsf3Q9QXK7 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cpsf3Q9QXK7 Kcnj5-203ENSMUST00000216033 2440 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Cpsf3Q9QXK7 Grik3-201ENSMUST00000030676 8973 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cpsf3Q9QXK7 AC091458.1-201ENSMUST00000220902 1361 ntBASIC12.91□□□□□ -0.34
Cpsf3Q9QXK7 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cpsf3Q9QXK7 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Cpsf3Q9QXK7 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Cpsf3Q9QXK7 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Iqsec2-201ENSMUST00000096275 5252 ntAPPRIS P3 TSL 2 BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Gm7537-201ENSMUST00000221660 1414 ntBASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Unc13a-201ENSMUST00000030170 10255 ntAPPRIS P2 TSL 5 BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Plxna1-201ENSMUST00000049845 5810 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Eif5a-205ENSMUST00000108608 775 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Gm15515-201ENSMUST00000117827 822 ntBASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Cd63-ps-202ENSMUST00000154992 717 ntBASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 H2-Q3-201ENSMUST00000172583 608 ntBASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Gm18734-201ENSMUST00000172937 808 ntBASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Mir5120-201ENSMUST00000175020 78 ntBASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Gm33222-201ENSMUST00000193725 654 ntTSL 3 BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Gm9797-202ENSMUST00000218003 294 ntBASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 AC155637.1-201ENSMUST00000218560 636 ntBASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Myo18a-210ENSMUST00000130305 5450 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cpsf3Q9QXK7 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Cpsf3Q9QXK7 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Cpsf3Q9QXK7 Gm44831-201ENSMUST00000208469 2989 ntBASIC12.9□□□□□ -0.35
Cpsf3Q9QXK7 Slc25a24-201ENSMUST00000029477 3431 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Cpsf3Q9QXK7 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.35
Cpsf3Q9QXK7 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cpsf3Q9QXK7 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cpsf3Q9QXK7 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
Cpsf3Q9QXK7 Gm43807-201ENSMUST00000200678 1781 ntBASIC12.89□□□□□ -0.35
Cpsf3Q9QXK7 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC12.89□□□□□ -0.35
Cpsf3Q9QXK7 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Cpsf3Q9QXK7 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cpsf3Q9QXK7 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cpsf3Q9QXK7 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cpsf3Q9QXK7 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Cpsf3Q9QXK7 Phrf1-202ENSMUST00000122143 4864 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cpsf3Q9QXK7 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Cpsf3Q9QXK7 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cpsf3Q9QXK7 Ighg2c-201ENSMUST00000103416 1214 ntAPPRIS P5 BASIC12.89□□□□□ -0.35
Cpsf3Q9QXK7 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
Cpsf3Q9QXK7 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Cpsf3Q9QXK7 Gm12196-201ENSMUST00000120954 262 ntBASIC12.89□□□□□ -0.35
Cpsf3Q9QXK7 Gm11660-201ENSMUST00000120955 412 ntBASIC12.89□□□□□ -0.35
Cpsf3Q9QXK7 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC12.89□□□□□ -0.35
Cpsf3Q9QXK7 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC12.89□□□□□ -0.35
Cpsf3Q9QXK7 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC12.89□□□□□ -0.35
Cpsf3Q9QXK7 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC12.89□□□□□ -0.35
Cpsf3Q9QXK7 AC133602.1-201ENSMUST00000227510 509 ntBASIC12.89□□□□□ -0.35
Cpsf3Q9QXK7 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
Cpsf3Q9QXK7 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
Cpsf3Q9QXK7 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cpsf3Q9QXK7 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cpsf3Q9QXK7 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cpsf3Q9QXK7 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 63.9 ms