Protein–RNA interactions for Protein: Q9JKS4

Ldb3, LIM domain-binding protein 3, mousemouse

Known RBP Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ldb3Q9JKS4 CT009713.10-202ENSMUST00000225734 696 ntBASIC10.88□□□□□ -0.67
Ldb3Q9JKS4 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ldb3Q9JKS4 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ldb3Q9JKS4 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ldb3Q9JKS4 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ldb3Q9JKS4 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Ldb3Q9JKS4 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ldb3Q9JKS4 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ldb3Q9JKS4 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ldb3Q9JKS4 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ldb3Q9JKS4 Gdap2-201ENSMUST00000029459 3008 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ldb3Q9JKS4 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC10.88□□□□□ -0.67
Ldb3Q9JKS4 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ldb3Q9JKS4 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ldb3Q9JKS4 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Ldb3Q9JKS4 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Ldb3Q9JKS4 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ldb3Q9JKS4 AC166574.4-201ENSMUST00000227165 1937 ntBASIC10.88□□□□□ -0.67
Ldb3Q9JKS4 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Ldb3Q9JKS4 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Grap2-201ENSMUST00000043149 3158 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Cdh18-204ENSMUST00000165614 2162 ntTSL 5 BASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 CT573086.2-201ENSMUST00000227277 4992 ntBASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 E330021D16Rik-203ENSMUST00000204830 1813 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Tmem74bos-201ENSMUST00000137422 390 ntTSL 3 BASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Gm27627-201ENSMUST00000183644 150 ntBASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Gm29615-201ENSMUST00000185371 697 ntBASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Gm28224-201ENSMUST00000186078 697 ntBASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Gm29001-201ENSMUST00000186177 697 ntBASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Gm28292-201ENSMUST00000186593 697 ntBASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Gm28101-201ENSMUST00000187608 697 ntBASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Gm29076-201ENSMUST00000187689 697 ntBASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Gm28302-201ENSMUST00000187931 697 ntBASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Gm28646-201ENSMUST00000188220 697 ntBASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Gm28205-201ENSMUST00000189177 697 ntBASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Gm29032-201ENSMUST00000189797 697 ntBASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Gm28695-201ENSMUST00000190300 697 ntBASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Gm37448-201ENSMUST00000192795 697 ntBASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Gm7003-201ENSMUST00000195089 312 ntBASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Gm17827-201ENSMUST00000211825 742 ntBASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Gm32468-201ENSMUST00000214199 1040 ntTSL 5 BASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Gm43267-201ENSMUST00000199664 1796 ntBASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Tbx10-201ENSMUST00000041871 1777 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 AC173482.6-201ENSMUST00000225889 1741 ntBASIC10.87□□□□□ -0.67
Ldb3Q9JKS4 Odf2l-201ENSMUST00000029920 2239 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 Epb41l2-207ENSMUST00000218903 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 Crem-233ENSMUST00000154135 2530 ntTSL 5 BASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 Gm15004-201ENSMUST00000119192 630 ntBASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 Gm14441-201ENSMUST00000121960 540 ntBASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 Ip6k2-202ENSMUST00000192028 1199 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 Gm21027-201ENSMUST00000219300 1236 ntBASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 AC121960.1-201ENSMUST00000227982 564 ntBASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 Dis3l-208ENSMUST00000168844 3575 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC10.86□□□□□ -0.67
Ldb3Q9JKS4 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC10.86□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms