Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 CU062626.3-201ENSMUST00000225522 1411 ntBASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Madd-211ENSMUST00000111373 5641 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Gm27177-202ENSMUST00000183514 2703 ntBASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Ptprr-204ENSMUST00000128399 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Poc5-201ENSMUST00000099295 5183 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Gm12286-201ENSMUST00000119246 1002 ntBASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Rprl1-202ENSMUST00000198476 238 ntBASIC11.19□□□□□ -0.62
Cdc40Q9DC48 S100a3-204ENSMUST00000200290 509 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Hectd4-201ENSMUST00000042614 15482 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 CT025624.1-201ENSMUST00000224007 2700 ntBASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Iqsec1-201ENSMUST00000101151 6490 ntTSL 5 BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Nupl1-206ENSMUST00000225111 2936 ntBASIC11.19□□□□□ -0.62
Cdc40Q9DC48 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdc40Q9DC48 AC157950.1-201ENSMUST00000217561 2168 ntBASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 P2rx7-203ENSMUST00000100737 4936 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Sel1l-204ENSMUST00000167466 5544 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Tardbp-206ENSMUST00000105702 6425 ntTSL 5 BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Pcdhga3-201ENSMUST00000073447 4720 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Gm2238-201ENSMUST00000192074 3669 ntBASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Olfr648-202ENSMUST00000216612 2929 ntAPPRIS P1 TSL 2 BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Myh13-201ENSMUST00000081911 5817 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Asap1-203ENSMUST00000110115 4535 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Pla2g1b-202ENSMUST00000112071 361 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Gm14832-201ENSMUST00000121289 322 ntBASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Gm24845-201ENSMUST00000158034 109 ntBASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Gm4034-201ENSMUST00000187674 480 ntBASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Gm45691-201ENSMUST00000206905 1120 ntBASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Rassf5-205ENSMUST00000212202 958 ntTSL 5 BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Arhgef15-203ENSMUST00000108671 4372 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Gm36970-201ENSMUST00000193688 1859 ntBASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Gm9361-201ENSMUST00000198695 1507 ntBASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 D130043K22Rik-201ENSMUST00000006893 4973 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC11.18□□□□□ -0.62
Cdc40Q9DC48 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Gm9279-201ENSMUST00000223175 1606 ntBASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Sh3pxd2a-201ENSMUST00000081619 10464 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms