Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Mast3-203ENSMUST00000211948 4251 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Taf6l-202ENSMUST00000010249 848 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Gm8199-201ENSMUST00000121323 823 ntBASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Gm28686-201ENSMUST00000187404 609 ntBASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 1700030I03Rik-201ENSMUST00000192978 942 ntBASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Arntl-206ENSMUST00000211770 2464 ntTSL 5 BASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Gm45909-201ENSMUST00000212413 1031 ntBASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Gm9129-201ENSMUST00000218173 1689 ntBASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 AC160405.1-201ENSMUST00000218207 1545 ntBASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Csrp2-203ENSMUST00000219502 544 ntTSL 3 BASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 AC091458.1-201ENSMUST00000220902 1361 ntBASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 AC151275.1-201ENSMUST00000224870 585 ntBASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 AC121960.1-201ENSMUST00000227982 564 ntBASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Tbc1d24-209ENSMUST00000201301 4261 ntTSL 5 BASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Wdr18-201ENSMUST00000045247 3911 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Pmp22-204ENSMUST00000108702 1822 ntAPPRIS P1 TSL 3 BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Cyb5rl-202ENSMUST00000106756 1604 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Gm5422-201ENSMUST00000050717 2721 ntBASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Olfr520-202ENSMUST00000220185 1330 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Gm11663-201ENSMUST00000117888 290 ntBASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Gm5419-201ENSMUST00000119301 527 ntBASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Gm13461-201ENSMUST00000120980 662 ntBASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 C230038L03Rik-202ENSMUST00000136294 1197 ntTSL 2 BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 4930562C15Rik-202ENSMUST00000171105 1299 ntTSL 2 BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Cyb561-206ENSMUST00000184086 1130 ntTSL 5 BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Gm27530-201ENSMUST00000184096 98 ntBASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 4833445I07Rik-202ENSMUST00000194104 579 ntTSL 3 BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Gm5051-201ENSMUST00000204085 485 ntBASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Gm2511-202ENSMUST00000206158 455 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Gm36970-201ENSMUST00000193688 1859 ntBASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Fam198a-203ENSMUST00000214536 2789 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 AC173482.6-201ENSMUST00000225889 1741 ntBASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Cyp2a12-201ENSMUST00000075552 1681 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sf3b1Q99NB9 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Dip2a-201ENSMUST00000036033 6322 ntAPPRIS P2 TSL 5 BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Skap1-206ENSMUST00000107663 742 ntTSL 3 BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Gm13809-201ENSMUST00000117921 597 ntBASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Cspp1-204ENSMUST00000119714 1268 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Gm11660-201ENSMUST00000120955 412 ntBASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 9030616G12Rik-201ENSMUST00000181142 644 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Gm10774-201ENSMUST00000188689 204 ntBASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Gm38804-201ENSMUST00000203998 767 ntTSL 3 BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Gm43916-201ENSMUST00000205062 967 ntBASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Gm10179-201ENSMUST00000086233 688 ntBASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms