Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Usp40Q8BWR4 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Usp40Q8BWR4 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Usp40Q8BWR4 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Cfap100-207ENSMUST00000165673 2072 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Gm12856-201ENSMUST00000119471 1293 ntBASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Gm12899-201ENSMUST00000120565 551 ntBASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Gm13605-201ENSMUST00000124489 658 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Gm15764-201ENSMUST00000150389 672 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Gm22138-201ENSMUST00000158748 128 ntBASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Gm6485-201ENSMUST00000160676 439 ntBASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Wdr53-204ENSMUST00000178573 1153 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Gm37458-201ENSMUST00000194055 410 ntBASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Gm45219-201ENSMUST00000205602 465 ntBASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Gm40709-203ENSMUST00000219695 973 ntTSL 5 BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Lst1-201ENSMUST00000097336 415 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Olfr222-203ENSMUST00000215339 2166 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Usp40Q8BWR4 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Usp40Q8BWR4 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Usp40Q8BWR4 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Usp40Q8BWR4 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Usp40Q8BWR4 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Usp40Q8BWR4 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Usp40Q8BWR4 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Usp40Q8BWR4 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
Usp40Q8BWR4 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Usp40Q8BWR4 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Usp40Q8BWR4 Gm11815-201ENSMUST00000139423 708 ntTSL 5 BASIC16.4■□□□□ 0.22
Usp40Q8BWR4 Rps28-203ENSMUST00000173019 437 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
Usp40Q8BWR4 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Usp40Q8BWR4 Insig2-214ENSMUST00000186915 674 ntTSL 3 BASIC16.4■□□□□ 0.22
Usp40Q8BWR4 Gm44329-201ENSMUST00000197469 112 ntBASIC16.4■□□□□ 0.22
Usp40Q8BWR4 AC115122.1-201ENSMUST00000224850 1040 ntBASIC16.4■□□□□ 0.22
Usp40Q8BWR4 Prm3-201ENSMUST00000050864 410 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Usp40Q8BWR4 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Usp40Q8BWR4 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Usp40Q8BWR4 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Usp40Q8BWR4 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Usp40Q8BWR4 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Usp40Q8BWR4 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Usp40Q8BWR4 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Usp40Q8BWR4 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Usp40Q8BWR4 Pstpip2-201ENSMUST00000114741 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Usp40Q8BWR4 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Usp40Q8BWR4 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Usp40Q8BWR4 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Usp40Q8BWR4 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Usp40Q8BWR4 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Usp40Q8BWR4 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Usp40Q8BWR4 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Usp40Q8BWR4 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Usp40Q8BWR4 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Usp40Q8BWR4 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Usp40Q8BWR4 Rps9-203ENSMUST00000108624 478 ntTSL 5 BASIC16.39■□□□□ 0.21
Usp40Q8BWR4 Spx-202ENSMUST00000126521 357 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
Usp40Q8BWR4 Hmgn3-201ENSMUST00000161796 862 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Usp40Q8BWR4 9930004E17Rik-201ENSMUST00000180031 498 ntBASIC16.39■□□□□ 0.21
Usp40Q8BWR4 Pbld1-204ENSMUST00000219045 602 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Usp40Q8BWR4 Npff-201ENSMUST00000023814 540 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Usp40Q8BWR4 Fuk-201ENSMUST00000041382 3838 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Usp40Q8BWR4 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Usp40Q8BWR4 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Usp40Q8BWR4 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC16.39■□□□□ 0.21
Usp40Q8BWR4 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC16.39■□□□□ 0.21
Usp40Q8BWR4 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Usp40Q8BWR4 Tulp2-202ENSMUST00000085331 1525 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Usp40Q8BWR4 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Usp40Q8BWR4 Hspa14-201ENSMUST00000027961 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Tbrg1-201ENSMUST00000117654 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Ighv1-61-201ENSMUST00000103531 351 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Gm25076-201ENSMUST00000104098 132 ntBASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Gm12419-201ENSMUST00000116649 636 ntBASIC16.38■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 54.2 ms