Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim56Q80VI1 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim56Q80VI1 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim56Q80VI1 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC14.15□□□□□ -0.14
Trim56Q80VI1 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
Trim56Q80VI1 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC14.15□□□□□ -0.14
Trim56Q80VI1 Gm11450-201ENSMUST00000121144 333 ntBASIC14.15□□□□□ -0.14
Trim56Q80VI1 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC14.15□□□□□ -0.14
Trim56Q80VI1 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC14.15□□□□□ -0.14
Trim56Q80VI1 Ccdc127-205ENSMUST00000162672 677 ntTSL 3 BASIC14.15□□□□□ -0.14
Trim56Q80VI1 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC14.15□□□□□ -0.14
Trim56Q80VI1 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC14.15□□□□□ -0.14
Trim56Q80VI1 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC14.15□□□□□ -0.14
Trim56Q80VI1 Gm19287-201ENSMUST00000203190 358 ntBASIC14.15□□□□□ -0.14
Trim56Q80VI1 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Trim56Q80VI1 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim56Q80VI1 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim56Q80VI1 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim56Q80VI1 AC138329.2-201ENSMUST00000225579 1842 ntBASIC14.15□□□□□ -0.14
Trim56Q80VI1 Xkr6-202ENSMUST00000120820 1702 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim56Q80VI1 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim56Q80VI1 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim56Q80VI1 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim56Q80VI1 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim56Q80VI1 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim56Q80VI1 Qrich1-201ENSMUST00000006851 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim56Q80VI1 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim56Q80VI1 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trim56Q80VI1 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Trim56Q80VI1 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Trim56Q80VI1 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC14.14□□□□□ -0.15
Trim56Q80VI1 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim56Q80VI1 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim56Q80VI1 Ubxn10-203ENSMUST00000105811 2926 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim56Q80VI1 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim56Q80VI1 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Trim56Q80VI1 Gm8566-201ENSMUST00000120174 465 ntBASIC14.14□□□□□ -0.15
Trim56Q80VI1 Gm11660-201ENSMUST00000120955 412 ntBASIC14.14□□□□□ -0.15
Trim56Q80VI1 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim56Q80VI1 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim56Q80VI1 Trav13-4-dv7-202ENSMUST00000184905 264 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Trim56Q80VI1 Gm5733-201ENSMUST00000190232 939 ntBASIC14.14□□□□□ -0.15
Trim56Q80VI1 Gm42682-201ENSMUST00000198349 1265 ntBASIC14.14□□□□□ -0.15
Trim56Q80VI1 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim56Q80VI1 Gm19208-201ENSMUST00000213861 912 ntBASIC14.14□□□□□ -0.15
Trim56Q80VI1 Prop1-201ENSMUST00000051159 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim56Q80VI1 Krtap19-1-201ENSMUST00000081334 493 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Trim56Q80VI1 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim56Q80VI1 Gm21811-201ENSMUST00000096485 930 ntBASIC14.14□□□□□ -0.15
Trim56Q80VI1 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trim56Q80VI1 Gck-201ENSMUST00000102920 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim56Q80VI1 Pamr1-201ENSMUST00000028612 2864 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim56Q80VI1 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim56Q80VI1 AC108858.2-201ENSMUST00000228186 1425 ntBASIC14.14□□□□□ -0.15
Trim56Q80VI1 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC14.14□□□□□ -0.15
Trim56Q80VI1 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim56Q80VI1 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim56Q80VI1 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim56Q80VI1 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim56Q80VI1 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim56Q80VI1 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim56Q80VI1 AC091458.1-201ENSMUST00000220902 1361 ntBASIC14.13□□□□□ -0.15
Trim56Q80VI1 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trim56Q80VI1 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trim56Q80VI1 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim56Q80VI1 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim56Q80VI1 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC14.13□□□□□ -0.15
Trim56Q80VI1 Gm13035-201ENSMUST00000117496 342 ntBASIC14.13□□□□□ -0.15
Trim56Q80VI1 Mageb17-ps-201ENSMUST00000117902 919 ntBASIC14.13□□□□□ -0.15
Trim56Q80VI1 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Trim56Q80VI1 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Trim56Q80VI1 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trim56Q80VI1 AC151275.1-201ENSMUST00000224870 585 ntBASIC14.13□□□□□ -0.15
Trim56Q80VI1 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim56Q80VI1 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim56Q80VI1 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Trim56Q80VI1 Rpl7-201ENSMUST00000058437 1163 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim56Q80VI1 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim56Q80VI1 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Trim56Q80VI1 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim56Q80VI1 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Trim56Q80VI1 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trim56Q80VI1 6030458C11Rik-204ENSMUST00000228177 3156 ntBASIC14.13□□□□□ -0.15
Trim56Q80VI1 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim56Q80VI1 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim56Q80VI1 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC14.13□□□□□ -0.15
Trim56Q80VI1 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trim56Q80VI1 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC14.13□□□□□ -0.15
Trim56Q80VI1 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim56Q80VI1 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Elmod3-204ENSMUST00000141833 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Ptgdr-201ENSMUST00000095959 3187 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Tbx10-201ENSMUST00000041871 1777 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Cdh18-204ENSMUST00000165614 2162 ntTSL 5 BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Aldh4a1-201ENSMUST00000039818 3382 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 49.6 ms