Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC12.22□□□□□ -0.45
Sh3rf1Q69ZI1 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sh3rf1Q69ZI1 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC12.22□□□□□ -0.45
Sh3rf1Q69ZI1 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Sh3rf1Q69ZI1 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC12.22□□□□□ -0.45
Sh3rf1Q69ZI1 Gm31256-201ENSMUST00000194705 506 ntBASIC12.22□□□□□ -0.45
Sh3rf1Q69ZI1 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC12.22□□□□□ -0.45
Sh3rf1Q69ZI1 Gm5904-201ENSMUST00000210286 865 ntBASIC12.22□□□□□ -0.45
Sh3rf1Q69ZI1 Gm5363-201ENSMUST00000211927 938 ntBASIC12.22□□□□□ -0.45
Sh3rf1Q69ZI1 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sh3rf1Q69ZI1 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
Sh3rf1Q69ZI1 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC12.22□□□□□ -0.45
Sh3rf1Q69ZI1 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sh3rf1Q69ZI1 Nfatc4-202ENSMUST00000172271 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sh3rf1Q69ZI1 E330021D16Rik-203ENSMUST00000204830 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sh3rf1Q69ZI1 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sh3rf1Q69ZI1 Epm2aip1-202ENSMUST00000135807 4245 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
Sh3rf1Q69ZI1 Gm43267-201ENSMUST00000199664 1796 ntBASIC12.22□□□□□ -0.45
Sh3rf1Q69ZI1 9430038I01Rik-203ENSMUST00000120340 4643 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sh3rf1Q69ZI1 Rps6kl1-202ENSMUST00000221972 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sh3rf1Q69ZI1 Coro6-204ENSMUST00000102493 2804 ntAPPRIS ALT1 TSL 5 BASIC12.22□□□□□ -0.45
Sh3rf1Q69ZI1 Ifnar1-201ENSMUST00000023689 3909 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sh3rf1Q69ZI1 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Sh3rf1Q69ZI1 Cdh18-204ENSMUST00000165614 2162 ntTSL 5 BASIC12.22□□□□□ -0.45
Sh3rf1Q69ZI1 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sh3rf1Q69ZI1 Eps8l2-201ENSMUST00000026577 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sh3rf1Q69ZI1 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC12.22□□□□□ -0.45
Sh3rf1Q69ZI1 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sh3rf1Q69ZI1 Nanos2-201ENSMUST00000063563 1563 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Sh3rf1Q69ZI1 Gm45776-201ENSMUST00000212366 1522 ntBASIC12.21□□□□□ -0.45
Sh3rf1Q69ZI1 Mei1-201ENSMUST00000089178 3974 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Sh3rf1Q69ZI1 Ephx3-201ENSMUST00000087721 2416 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sh3rf1Q69ZI1 Kcnh6-202ENSMUST00000106903 2816 ntTSL 5 BASIC12.21□□□□□ -0.45
Sh3rf1Q69ZI1 Mob4-205ENSMUST00000162364 2840 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sh3rf1Q69ZI1 Patl1-201ENSMUST00000061618 4221 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sh3rf1Q69ZI1 Vmn1r45-206ENSMUST00000227977 3297 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Sh3rf1Q69ZI1 Plcg1-202ENSMUST00000103115 4435 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Sh3rf1Q69ZI1 Gm8862-201ENSMUST00000198379 1346 ntBASIC12.21□□□□□ -0.45
Sh3rf1Q69ZI1 Abcg4-201ENSMUST00000034648 3476 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sh3rf1Q69ZI1 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sh3rf1Q69ZI1 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sh3rf1Q69ZI1 Gm14726-201ENSMUST00000120623 896 ntBASIC12.21□□□□□ -0.45
Sh3rf1Q69ZI1 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC12.21□□□□□ -0.45
Sh3rf1Q69ZI1 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Sh3rf1Q69ZI1 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC12.21□□□□□ -0.45
Sh3rf1Q69ZI1 Mir7070-201ENSMUST00000183657 86 ntBASIC12.21□□□□□ -0.45
Sh3rf1Q69ZI1 Gm6652-201ENSMUST00000186414 1070 ntBASIC12.21□□□□□ -0.45
Sh3rf1Q69ZI1 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC12.21□□□□□ -0.45
Sh3rf1Q69ZI1 Gm18753-201ENSMUST00000201000 566 ntBASIC12.21□□□□□ -0.45
Sh3rf1Q69ZI1 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC12.21□□□□□ -0.45
Sh3rf1Q69ZI1 AC155637.1-201ENSMUST00000218560 636 ntBASIC12.21□□□□□ -0.45
Sh3rf1Q69ZI1 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sh3rf1Q69ZI1 Abcb9-201ENSMUST00000031354 3661 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sh3rf1Q69ZI1 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Sh3rf1Q69ZI1 Adgrg5-201ENSMUST00000074570 2802 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sh3rf1Q69ZI1 Dlg4-203ENSMUST00000108588 3457 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sh3rf1Q69ZI1 Far2-201ENSMUST00000032443 3480 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sh3rf1Q69ZI1 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Sh3rf1Q69ZI1 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC12.21□□□□□ -0.46
Sh3rf1Q69ZI1 Gm44775-201ENSMUST00000207266 1456 ntBASIC12.21□□□□□ -0.46
Sh3rf1Q69ZI1 Arhgap29-201ENSMUST00000037958 5787 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sh3rf1Q69ZI1 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sh3rf1Q69ZI1 Fen1-202ENSMUST00000116542 2100 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sh3rf1Q69ZI1 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sh3rf1Q69ZI1 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Sh3rf1Q69ZI1 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sh3rf1Q69ZI1 Mark3-208ENSMUST00000221753 2394 ntTSL 5 BASIC12.2□□□□□ -0.46
Sh3rf1Q69ZI1 Tmem215-201ENSMUST00000049655 4733 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sh3rf1Q69ZI1 Gm43102-201ENSMUST00000201004 2324 ntBASIC12.2□□□□□ -0.46
Sh3rf1Q69ZI1 Hmbox1-202ENSMUST00000067843 2931 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sh3rf1Q69ZI1 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Sh3rf1Q69ZI1 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC12.2□□□□□ -0.46
Sh3rf1Q69ZI1 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC12.2□□□□□ -0.46
Sh3rf1Q69ZI1 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC12.2□□□□□ -0.46
Sh3rf1Q69ZI1 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC12.2□□□□□ -0.46
Sh3rf1Q69ZI1 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC12.2□□□□□ -0.46
Sh3rf1Q69ZI1 1700011D18Rik-201ENSMUST00000205762 277 ntBASIC12.2□□□□□ -0.46
Sh3rf1Q69ZI1 Gm44772-201ENSMUST00000207623 1191 ntBASIC12.2□□□□□ -0.46
Sh3rf1Q69ZI1 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sh3rf1Q69ZI1 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sh3rf1Q69ZI1 Fam107b-201ENSMUST00000027965 3156 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sh3rf1Q69ZI1 Frmd3-201ENSMUST00000084474 4136 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sh3rf1Q69ZI1 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sh3rf1Q69ZI1 Tnip1-202ENSMUST00000102730 2787 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sh3rf1Q69ZI1 Pde4c-207ENSMUST00000224874 3099 ntAPPRIS ALT2 BASIC12.2□□□□□ -0.46
Sh3rf1Q69ZI1 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC12.2□□□□□ -0.46
Sh3rf1Q69ZI1 Acly-201ENSMUST00000007131 4393 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sh3rf1Q69ZI1 Onecut1-201ENSMUST00000056006 3957 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sh3rf1Q69ZI1 Mier3-201ENSMUST00000047412 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 4930433J02Rik-201ENSMUST00000194719 1386 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Matn2-201ENSMUST00000022947 3551 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Coa4-201ENSMUST00000054310 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Ankrd35-201ENSMUST00000048427 4052 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Rnf123-218ENSMUST00000178267 4309 ntAPPRIS P3 TSL 5 BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Ntng2-202ENSMUST00000071201 1881 ntTSL 5 BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Pop4-201ENSMUST00000032585 2113 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms