Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Olfr222-203ENSMUST00000215339 2166 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 AC126257.1-201ENSMUST00000213195 1536 ntBASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Fbxl12-201ENSMUST00000086458 2056 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Tirap-203ENSMUST00000176531 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Wasf2-202ENSMUST00000105912 2236 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Ctdspl2-201ENSMUST00000036647 5053 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Nemp1-203ENSMUST00000118728 2362 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Gm8522-201ENSMUST00000118416 1929 ntBASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Iqcc-201ENSMUST00000046675 2639 ntAPPRIS P2 TSL 2 BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Cnot7-211ENSMUST00000149992 2982 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Ripor1-201ENSMUST00000043531 4108 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Gm15808-201ENSMUST00000119046 604 ntBASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Ighv5-7-201ENSMUST00000192302 244 ntBASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Gm43962-201ENSMUST00000203898 190 ntBASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Gm17812-201ENSMUST00000204935 318 ntBASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Gm4607-201ENSMUST00000206649 577 ntBASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Gm8913-201ENSMUST00000209491 641 ntBASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 AC153954.1-201ENSMUST00000216959 255 ntBASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Olfr648-202ENSMUST00000216612 2929 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Olfr283-202ENSMUST00000215830 2392 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Gm44831-201ENSMUST00000208469 2989 ntBASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Rnf43-203ENSMUST00000121782 2640 ntTSL 5 BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Osbp2-201ENSMUST00000070552 4097 ntAPPRIS P3 TSL 5 BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Stox2-209ENSMUST00000211882 9696 ntTSL 5 BASIC12.86□□□□□ -0.35
Upf3bQ3ULL6 Sorcs1-203ENSMUST00000164039 7241 ntAPPRIS ALT1 TSL 5 BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Qrich1-201ENSMUST00000006851 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Cisd2-201ENSMUST00000029815 3361 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Vwa7-201ENSMUST00000007245 4313 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Gm11511-201ENSMUST00000118146 540 ntBASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Gm12036-201ENSMUST00000120008 530 ntBASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Gm18893-201ENSMUST00000198416 943 ntBASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Phpt1-201ENSMUST00000039156 937 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Stk10-201ENSMUST00000102821 5026 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Gm44806-201ENSMUST00000205574 2303 ntBASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Fancc-217ENSMUST00000163091 2995 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Tmem266-202ENSMUST00000085754 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 2010315B03Rik-202ENSMUST00000177714 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Gm5847-201ENSMUST00000178959 1595 ntBASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Aifm2-203ENSMUST00000099706 3086 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Upf3bQ3ULL6 Rai1-207ENSMUST00000171108 7125 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Upf3bQ3ULL6 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Upf3bQ3ULL6 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Upf3bQ3ULL6 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Upf3bQ3ULL6 Stim1-202ENSMUST00000209255 4362 ntTSL 5 BASIC12.84□□□□□ -0.35
Upf3bQ3ULL6 Tmem30c-202ENSMUST00000119407 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms