Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Ltbp2-202ENSMUST00000110254 6602 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Tirap-203ENSMUST00000176531 2310 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Chl1-204ENSMUST00000203912 4628 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Foxn4-201ENSMUST00000044790 3016 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Rbm6-207ENSMUST00000183032 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 AC108858.2-201ENSMUST00000228186 1425 ntBASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Rnf214-208ENSMUST00000161187 2847 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Arhgap20-204ENSMUST00000130405 3881 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Patl1-201ENSMUST00000061618 4221 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Btbd9-201ENSMUST00000079924 6657 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Palld-202ENSMUST00000121200 4193 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Lman1l-202ENSMUST00000093832 1685 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Sash3-201ENSMUST00000033427 2677 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Gtf3c4-201ENSMUST00000037117 6941 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Rragd-202ENSMUST00000084747 4295 ntTSL 5 BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Cryba4-203ENSMUST00000112385 808 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Gm11964-201ENSMUST00000120982 444 ntBASIC11.69□□□□□ -0.54
Col28a1Q2UY11 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Gm29396-201ENSMUST00000185659 716 ntBASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Gm38092-201ENSMUST00000195600 653 ntBASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Gm7118-201ENSMUST00000200167 1003 ntBASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Gm7619-201ENSMUST00000210649 1282 ntBASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 AC153974.2-201ENSMUST00000218577 1025 ntBASIC11.69□□□□□ -0.54
Col28a1Q2UY11 AC154462.2-201ENSMUST00000227519 370 ntBASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Fcer2a-201ENSMUST00000005678 2242 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Pag1-201ENSMUST00000108384 3729 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Kcnd1-201ENSMUST00000009875 5287 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Vamp1-201ENSMUST00000032487 2772 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Stxbp6-202ENSMUST00000120531 4209 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Abca7-203ENSMUST00000171637 6638 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Hoxa9-201ENSMUST00000048680 3226 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Usp24-201ENSMUST00000094933 10575 ntAPPRIS P2 TSL 5 BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Myo7a-203ENSMUST00000107127 6806 ntAPPRIS P3 TSL 5 BASIC11.69□□□□□ -0.54
Col28a1Q2UY11 Slc46a2-201ENSMUST00000030081 2833 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Cacna1c-212ENSMUST00000187940 7507 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Gm43321-201ENSMUST00000198897 2409 ntBASIC11.68□□□□□ -0.54
Col28a1Q2UY11 4931428F04Rik-201ENSMUST00000014981 3492 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Gm6203-201ENSMUST00000209575 1342 ntBASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Mfsd4b5-203ENSMUST00000164566 2372 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 AC138329.2-201ENSMUST00000225579 1842 ntBASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Kcnmb4os1-201ENSMUST00000134586 824 ntTSL 2 BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Gm23119-201ENSMUST00000158610 140 ntBASIC11.68□□□□□ -0.54
Col28a1Q2UY11 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Gm7895-201ENSMUST00000187459 1173 ntBASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Gm9176-201ENSMUST00000219955 1120 ntBASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Asap1-203ENSMUST00000110115 4535 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Wdr33-201ENSMUST00000025264 6206 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Gm15897-201ENSMUST00000117770 1486 ntBASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Sp2-202ENSMUST00000107623 2907 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Aicda-201ENSMUST00000043301 2405 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 D030045P18Rik-204ENSMUST00000215085 2186 ntTSL 5 BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Zfp689-201ENSMUST00000053392 3621 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Slurp1-202ENSMUST00000190433 2859 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Pmaip1-201ENSMUST00000025399 2646 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Gstcd-201ENSMUST00000029651 3503 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Cyp4b1-201ENSMUST00000102707 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Mpp4-204ENSMUST00000186477 1885 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC11.68□□□□□ -0.54
Col28a1Q2UY11 Strc-201ENSMUST00000038389 5756 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Asb3-202ENSMUST00000117883 2509 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Tfr2-208ENSMUST00000199054 2966 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Susd5-201ENSMUST00000135338 4083 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 AC124397.2-201ENSMUST00000225575 2215 ntBASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Pcif1-201ENSMUST00000041643 5772 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Gm26510-201ENSMUST00000180468 1796 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Adora1-203ENSMUST00000169927 4581 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Kcnh6-202ENSMUST00000106903 2816 ntTSL 5 BASIC11.67□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 96.5 ms