Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Shmt1P50431 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Shmt1P50431 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Shmt1P50431 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Shmt1P50431 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Shmt1P50431 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Shmt1P50431 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Ank2-203ENSMUST00000182008 2474 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC12.69□□□□□ -0.38
Shmt1P50431 Ncan-201ENSMUST00000002412 7195 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Atp1a2-201ENSMUST00000085913 6227 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Shmt1P50431 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC12.69□□□□□ -0.38
Shmt1P50431 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC12.69□□□□□ -0.38
Shmt1P50431 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC12.69□□□□□ -0.38
Shmt1P50431 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Gm14263-201ENSMUST00000117955 746 ntBASIC12.69□□□□□ -0.38
Shmt1P50431 Gm15172-201ENSMUST00000118945 1046 ntBASIC12.69□□□□□ -0.38
Shmt1P50431 Gm12201-201ENSMUST00000120657 1234 ntBASIC12.69□□□□□ -0.38
Shmt1P50431 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Shmt1P50431 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Gm25881-201ENSMUST00000157783 103 ntBASIC12.69□□□□□ -0.38
Shmt1P50431 Gm18734-201ENSMUST00000172937 808 ntBASIC12.69□□□□□ -0.38
Shmt1P50431 Rhox5-201ENSMUST00000179626 633 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Gm7848-201ENSMUST00000210739 718 ntBASIC12.69□□□□□ -0.38
Shmt1P50431 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC12.69□□□□□ -0.38
Shmt1P50431 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Hrct1-201ENSMUST00000095109 1452 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Shmt1P50431 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Shmt1P50431 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Shmt1P50431 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Insrr-201ENSMUST00000029711 5102 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Shmt1P50431 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Shmt1P50431 Nupl1-206ENSMUST00000225111 2936 ntBASIC12.68□□□□□ -0.38
Shmt1P50431 Gm43365-201ENSMUST00000196522 2106 ntBASIC12.68□□□□□ -0.38
Shmt1P50431 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Shmt1P50431 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Shmt1P50431 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Shmt1P50431 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Shmt1P50431 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC12.68□□□□□ -0.38
Shmt1P50431 Taok2-202ENSMUST00000117394 4985 ntAPPRIS P4 TSL 1 (best) BASIC12.68□□□□□ -0.38
Shmt1P50431 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Shmt1P50431 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Shmt1P50431 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Shmt1P50431 Abcb9-201ENSMUST00000031354 3661 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Shmt1P50431 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Shmt1P50431 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Shmt1P50431 Gltp-202ENSMUST00000112212 799 ntTSL 5 BASIC12.68□□□□□ -0.38
Shmt1P50431 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC12.68□□□□□ -0.38
Shmt1P50431 Gm11450-201ENSMUST00000121144 333 ntBASIC12.68□□□□□ -0.38
Shmt1P50431 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Shmt1P50431 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC12.68□□□□□ -0.38
Shmt1P50431 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC12.68□□□□□ -0.38
Shmt1P50431 Cd63-ps-202ENSMUST00000154992 717 ntBASIC12.68□□□□□ -0.38
Shmt1P50431 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC12.68□□□□□ -0.38
Shmt1P50431 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC12.68□□□□□ -0.38
Shmt1P50431 H2-Q3-201ENSMUST00000172583 608 ntBASIC12.68□□□□□ -0.38
Shmt1P50431 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Shmt1P50431 Gm28686-201ENSMUST00000187404 609 ntBASIC12.68□□□□□ -0.38
Shmt1P50431 Gm8959-201ENSMUST00000213150 571 ntBASIC12.68□□□□□ -0.38
Shmt1P50431 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC12.68□□□□□ -0.38
Shmt1P50431 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC12.68□□□□□ -0.38
Shmt1P50431 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Shmt1P50431 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Shmt1P50431 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Shmt1P50431 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Shmt1P50431 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
Shmt1P50431 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Shmt1P50431 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Shmt1P50431 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Shmt1P50431 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Shmt1P50431 Kalrn-211ENSMUST00000114966 3857 ntTSL 5 BASIC12.68□□□□□ -0.38
Shmt1P50431 Oprd1-201ENSMUST00000056336 4021 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Shmt1P50431 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Shmt1P50431 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Shmt1P50431 Dis3l-208ENSMUST00000168844 3575 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Shmt1P50431 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
Shmt1P50431 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Shmt1P50431 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 260.5 ms