Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ercc3P49135 Fam170a-201ENSMUST00000039121 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ercc3P49135 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ercc3P49135 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ercc3P49135 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ercc3P49135 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ercc3P49135 Gramd2-201ENSMUST00000098661 1368 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ercc3P49135 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ercc3P49135 Epha5-202ENSMUST00000113398 4830 ntTSL 5 BASIC14.28□□□□□ -0.12
Ercc3P49135 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Ercc3P49135 Rgs6-222ENSMUST00000202210 3069 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Ercc3P49135 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC14.28□□□□□ -0.12
Ercc3P49135 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Ercc3P49135 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ercc3P49135 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ercc3P49135 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ercc3P49135 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ercc3P49135 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ercc3P49135 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ercc3P49135 Epb41l2-204ENSMUST00000217929 3621 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Ercc3P49135 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Ercc3P49135 Mzf1-205ENSMUST00000182515 3340 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ercc3P49135 Nupl1-206ENSMUST00000225111 2936 ntBASIC14.27□□□□□ -0.12
Ercc3P49135 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ercc3P49135 Gm7993-201ENSMUST00000200970 1384 ntBASIC14.27□□□□□ -0.12
Ercc3P49135 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Ercc3P49135 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ercc3P49135 Gm14277-201ENSMUST00000121195 360 ntBASIC14.27□□□□□ -0.13
Ercc3P49135 Gm14017-201ENSMUST00000121934 386 ntBASIC14.27□□□□□ -0.13
Ercc3P49135 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ercc3P49135 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ercc3P49135 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC14.27□□□□□ -0.13
Ercc3P49135 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC14.27□□□□□ -0.13
Ercc3P49135 Gm38114-201ENSMUST00000191877 1232 ntBASIC14.27□□□□□ -0.13
Ercc3P49135 Gm45021-201ENSMUST00000204521 369 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Ercc3P49135 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ercc3P49135 Gm4607-201ENSMUST00000206649 577 ntBASIC14.27□□□□□ -0.13
Ercc3P49135 Gm5455-201ENSMUST00000058710 715 ntBASIC14.27□□□□□ -0.13
Ercc3P49135 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ercc3P49135 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ercc3P49135 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ercc3P49135 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ercc3P49135 Abcb9-201ENSMUST00000031354 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ercc3P49135 Gm20687-203ENSMUST00000185121 4242 ntTSL 2 BASIC14.26□□□□□ -0.13
Ercc3P49135 Zfp810-201ENSMUST00000086278 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ercc3P49135 Ift22-205ENSMUST00000200157 3071 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ercc3P49135 Pamr1-201ENSMUST00000028612 2864 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ercc3P49135 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Ercc3P49135 Gm18782-201ENSMUST00000209023 1399 ntBASIC14.26□□□□□ -0.13
Ercc3P49135 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ercc3P49135 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ercc3P49135 Gm23912-201ENSMUST00000104687 87 ntBASIC14.26□□□□□ -0.13
Ercc3P49135 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Ercc3P49135 Gm11439-201ENSMUST00000118598 409 ntBASIC14.26□□□□□ -0.13
Ercc3P49135 Gm12380-201ENSMUST00000119012 544 ntBASIC14.26□□□□□ -0.13
Ercc3P49135 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC14.26□□□□□ -0.13
Ercc3P49135 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC14.26□□□□□ -0.13
Ercc3P49135 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC14.26□□□□□ -0.13
Ercc3P49135 Gm16570-201ENSMUST00000161951 436 ntBASIC14.26□□□□□ -0.13
Ercc3P49135 Gm18711-201ENSMUST00000199341 750 ntBASIC14.26□□□□□ -0.13
Ercc3P49135 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ercc3P49135 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ercc3P49135 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ercc3P49135 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ercc3P49135 Rbm4b-201ENSMUST00000036744 1783 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ercc3P49135 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ercc3P49135 Gm44086-201ENSMUST00000203251 2349 ntBASIC14.26□□□□□ -0.13
Ercc3P49135 St6galnac6-201ENSMUST00000072111 2277 ntAPPRIS P3 TSL 5 BASIC14.26□□□□□ -0.13
Ercc3P49135 Gm43075-201ENSMUST00000198613 3905 ntBASIC14.26□□□□□ -0.13
Ercc3P49135 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
Ercc3P49135 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ercc3P49135 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ercc3P49135 Inip-201ENSMUST00000095063 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ercc3P49135 Gm43365-201ENSMUST00000196522 2106 ntBASIC14.26□□□□□ -0.13
Ercc3P49135 Ripor1-201ENSMUST00000043531 4108 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ercc3P49135 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Ercc3P49135 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ercc3P49135 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Ercc3P49135 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ercc3P49135 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ercc3P49135 Pcnx3-202ENSMUST00000113615 7264 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ercc3P49135 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ercc3P49135 Myo9b-202ENSMUST00000168839 7102 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Ercc3P49135 B3gat2-201ENSMUST00000063663 5655 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ercc3P49135 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC14.25□□□□□ -0.13
Ercc3P49135 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Ercc3P49135 Gm15711-201ENSMUST00000118889 535 ntBASIC14.25□□□□□ -0.13
Ercc3P49135 Gm43962-201ENSMUST00000203898 190 ntBASIC14.25□□□□□ -0.13
Ercc3P49135 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC14.25□□□□□ -0.13
Ercc3P49135 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC14.25□□□□□ -0.13
Ercc3P49135 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ercc3P49135 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ercc3P49135 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC14.25□□□□□ -0.13
Ercc3P49135 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ercc3P49135 Dnajc16-201ENSMUST00000038014 5969 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ercc3P49135 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Ercc3P49135 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Ercc3P49135 Gm38376-201ENSMUST00000195493 2253 ntBASIC14.25□□□□□ -0.13
Ercc3P49135 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ercc3P49135 Vcpip1-201ENSMUST00000057438 9749 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms