Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
Rfx3P48381 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Rfx3P48381 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Rfx3P48381 Zfp423-201ENSMUST00000052250 4510 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Rfx3P48381 Ces2a-201ENSMUST00000034346 1960 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
Rfx3P48381 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
Rfx3P48381 Mab21l3-202ENSMUST00000118411 2700 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Rfx3P48381 Slx4ip-206ENSMUST00000180277 2723 ntAPPRIS P1 TSL 3 BASIC10.86□□□□□ -0.67
Rfx3P48381 9430038I01Rik-203ENSMUST00000120340 4643 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Rfx3P48381 Tbc1d14-210ENSMUST00000140607 4649 ntAPPRIS P3 TSL 5 BASIC10.86□□□□□ -0.67
Rfx3P48381 Gpcpd1-205ENSMUST00000110142 3703 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
Rfx3P48381 Lrrn1-201ENSMUST00000049285 3700 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Rfx3P48381 Gm13848-202ENSMUST00000211663 1560 ntTSL 5 BASIC10.86□□□□□ -0.67
Rfx3P48381 Ndst1-201ENSMUST00000169273 6070 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Rfx3P48381 Ttc25-201ENSMUST00000006976 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Rfx3P48381 Pcdh10-202ENSMUST00000170695 8234 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
Rfx3P48381 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Rfx3P48381 Crkl-201ENSMUST00000006293 3863 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Rfx3P48381 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
Rfx3P48381 Gm8038-201ENSMUST00000164674 2044 ntBASIC10.86□□□□□ -0.67
Rfx3P48381 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Rfx3P48381 Gm9361-201ENSMUST00000198695 1507 ntBASIC10.86□□□□□ -0.67
Rfx3P48381 Mark3-208ENSMUST00000221753 2394 ntTSL 5 BASIC10.86□□□□□ -0.67
Rfx3P48381 Gm2606-201ENSMUST00000100754 1002 ntBASIC10.86□□□□□ -0.67
Rfx3P48381 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Rfx3P48381 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Rfx3P48381 Gm5187-201ENSMUST00000117317 991 ntBASIC10.86□□□□□ -0.67
Rfx3P48381 Gm12286-201ENSMUST00000119246 1002 ntBASIC10.86□□□□□ -0.67
Rfx3P48381 Gm14999-201ENSMUST00000121039 624 ntBASIC10.86□□□□□ -0.67
Rfx3P48381 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC10.86□□□□□ -0.67
Rfx3P48381 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Rfx3P48381 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
Rfx3P48381 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Rfx3P48381 Gm28262-201ENSMUST00000185463 477 ntTSL 5 BASIC10.86□□□□□ -0.67
Rfx3P48381 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Rfx3P48381 Smndc1-201ENSMUST00000025997 2125 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Rfx3P48381 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC10.86□□□□□ -0.67
Rfx3P48381 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC10.86□□□□□ -0.67
Rfx3P48381 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC10.86□□□□□ -0.67
Rfx3P48381 Tmod2-201ENSMUST00000064433 9884 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Rfx3P48381 Dsc2-202ENSMUST00000075214 4508 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
Rfx3P48381 Ppp1r3b-204ENSMUST00000211648 4386 ntAPPRIS P1 TSL 3 BASIC10.86□□□□□ -0.67
Rfx3P48381 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Rfx3P48381 Slc39a6-201ENSMUST00000070726 3882 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Rfx3P48381 Txlna-202ENSMUST00000084264 4847 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Rfx3P48381 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC10.86□□□□□ -0.67
Rfx3P48381 Iqsec1-201ENSMUST00000101151 6490 ntTSL 5 BASIC10.86□□□□□ -0.67
Rfx3P48381 Itga4-201ENSMUST00000099972 9767 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Rfx3P48381 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Rfx3P48381 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Rfx3P48381 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC10.86□□□□□ -0.67
Rfx3P48381 Tiparp-201ENSMUST00000047906 4191 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Rfx3P48381 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Rfx3P48381 Gabrr1-201ENSMUST00000029947 2286 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Rfx3P48381 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Rfx3P48381 Sec16a-202ENSMUST00000114082 8797 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
Rfx3P48381 Slit2-216ENSMUST00000174313 7734 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Rfx3P48381 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Rfx3P48381 Sptbn2-201ENSMUST00000008991 8251 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Rfx3P48381 Plet1-201ENSMUST00000114474 1689 ntAPPRIS P2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Rfx3P48381 Slc46a2-201ENSMUST00000030081 2833 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Rfx3P48381 Orc5-201ENSMUST00000030872 2103 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Rfx3P48381 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Rfx3P48381 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Rfx3P48381 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
Rfx3P48381 Ifnar1-201ENSMUST00000023689 3909 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Rfx3P48381 Accs-202ENSMUST00000068513 1872 ntAPPRIS P3 TSL 5 BASIC10.85□□□□□ -0.67
Rfx3P48381 Thsd4-202ENSMUST00000098660 8796 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Rfx3P48381 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Rfx3P48381 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Rfx3P48381 F730043M19Rik-204ENSMUST00000148740 3312 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Rfx3P48381 Zmynd8-203ENSMUST00000099084 5232 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
Rfx3P48381 Lrrc36-201ENSMUST00000067305 2082 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Rfx3P48381 Gm22018-201ENSMUST00000104357 131 ntBASIC10.85□□□□□ -0.67
Rfx3P48381 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC10.85□□□□□ -0.67
Rfx3P48381 Gm11658-201ENSMUST00000120913 1008 ntBASIC10.85□□□□□ -0.67
Rfx3P48381 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Rfx3P48381 Gm8062-201ENSMUST00000139696 444 ntBASIC10.85□□□□□ -0.67
Rfx3P48381 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Rfx3P48381 Igfbp4-201ENSMUST00000017637 3831 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Rfx3P48381 Gm2467-201ENSMUST00000182266 1010 ntBASIC10.85□□□□□ -0.67
Rfx3P48381 Gm6981-201ENSMUST00000182467 1008 ntBASIC10.85□□□□□ -0.67
Rfx3P48381 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC10.85□□□□□ -0.67
Rfx3P48381 Gm4034-201ENSMUST00000187674 480 ntBASIC10.85□□□□□ -0.67
Rfx3P48381 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC10.85□□□□□ -0.67
Rfx3P48381 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC10.85□□□□□ -0.67
Rfx3P48381 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC10.85□□□□□ -0.67
Rfx3P48381 Gm39404-201ENSMUST00000216350 313 ntBASIC10.85□□□□□ -0.67
Rfx3P48381 AC126253.1-202ENSMUST00000226732 835 ntBASIC10.85□□□□□ -0.67
Rfx3P48381 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Rfx3P48381 Tmem129-201ENSMUST00000019439 2828 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Rfx3P48381 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Rfx3P48381 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC10.85□□□□□ -0.67
Rfx3P48381 Rims3-202ENSMUST00000106283 6437 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
Rfx3P48381 Npbwr1-201ENSMUST00000044180 3692 ntAPPRIS P1 BASIC10.85□□□□□ -0.67
Rfx3P48381 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC10.85□□□□□ -0.67
Rfx3P48381 Gm19792-201ENSMUST00000222522 2021 ntTSL 5 BASIC10.85□□□□□ -0.67
Rfx3P48381 AC211878.3-201ENSMUST00000222629 2018 ntBASIC10.85□□□□□ -0.67
Rfx3P48381 Tenm3-201ENSMUST00000033965 8961 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
Rfx3P48381 Rims2-202ENSMUST00000082054 4800 ntAPPRIS P3 TSL 2 BASIC10.85□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 52.4 ms