Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC14.33□□□□□ -0.12
Rfx1P48377 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Rfx1P48377 Gm8494-201ENSMUST00000178171 1233 ntBASIC14.33□□□□□ -0.12
Rfx1P48377 Gm2762-206ENSMUST00000202502 335 ntTSL 3 BASIC14.33□□□□□ -0.12
Rfx1P48377 Gm2762-208ENSMUST00000202976 568 ntTSL 3 BASIC14.33□□□□□ -0.12
Rfx1P48377 Gm5035-201ENSMUST00000215581 927 ntBASIC14.33□□□□□ -0.12
Rfx1P48377 Gm5781-201ENSMUST00000219792 443 ntBASIC14.33□□□□□ -0.12
Rfx1P48377 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rfx1P48377 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Rfx1P48377 Foxk1-201ENSMUST00000072837 7439 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rfx1P48377 Uqcc1-203ENSMUST00000109632 2313 ntTSL 5 BASIC14.33□□□□□ -0.12
Rfx1P48377 Sdc1-201ENSMUST00000020911 3157 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rfx1P48377 Aicda-201ENSMUST00000043301 2405 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rfx1P48377 Capn15-201ENSMUST00000041641 3520 ntAPPRIS P3 TSL 5 BASIC14.33□□□□□ -0.12
Rfx1P48377 Gm43773-201ENSMUST00000198548 2162 ntBASIC14.33□□□□□ -0.12
Rfx1P48377 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC14.33□□□□□ -0.12
Rfx1P48377 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC14.33□□□□□ -0.12
Rfx1P48377 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rfx1P48377 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Rfx1P48377 AU019823-201ENSMUST00000131351 3316 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rfx1P48377 Ttc27-201ENSMUST00000024882 2820 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rfx1P48377 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rfx1P48377 Gm20427-201ENSMUST00000168978 3703 ntTSL 2 BASIC14.32□□□□□ -0.12
Rfx1P48377 Ccnt1-208ENSMUST00000169707 7397 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rfx1P48377 Tbx10-201ENSMUST00000041871 1777 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rfx1P48377 Trit1-201ENSMUST00000102649 2074 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rfx1P48377 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rfx1P48377 Tapbpl-201ENSMUST00000043422 2352 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rfx1P48377 Gm14025-201ENSMUST00000145798 4242 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Rfx1P48377 Caln1-202ENSMUST00000111287 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rfx1P48377 Tcp11l1-202ENSMUST00000111118 5474 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Rfx1P48377 Slc25a48-201ENSMUST00000021971 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rfx1P48377 Gm38140-201ENSMUST00000193617 2755 ntBASIC14.32□□□□□ -0.12
Rfx1P48377 Tsku-201ENSMUST00000094161 2760 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rfx1P48377 Stim1-209ENSMUST00000211457 2183 ntTSL 5 BASIC14.32□□□□□ -0.12
Rfx1P48377 Nol4l-202ENSMUST00000109784 5610 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Rfx1P48377 Slc17a5-202ENSMUST00000117645 3114 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Rfx1P48377 Hhipl2-201ENSMUST00000065900 2525 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Rfx1P48377 Gtf2ird2-201ENSMUST00000016086 3482 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rfx1P48377 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Rfx1P48377 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rfx1P48377 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC14.32□□□□□ -0.12
Rfx1P48377 Gm7809-201ENSMUST00000153199 742 ntBASIC14.32□□□□□ -0.12
Rfx1P48377 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC14.32□□□□□ -0.12
Rfx1P48377 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rfx1P48377 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Rfx1P48377 Gm37014-201ENSMUST00000194723 2253 ntBASIC14.32□□□□□ -0.12
Rfx1P48377 D130017N08Rik-203ENSMUST00000196629 2265 ntBASIC14.32□□□□□ -0.12
Rfx1P48377 A430033K04Rik-203ENSMUST00000198958 2264 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Rfx1P48377 Poldip3-201ENSMUST00000058793 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rfx1P48377 C2cd5-203ENSMUST00000171349 4292 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Rfx1P48377 Wdr75-201ENSMUST00000027139 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rfx1P48377 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Rfx1P48377 Gm43579-201ENSMUST00000202387 1307 ntBASIC14.32□□□□□ -0.12
Rfx1P48377 Lax1-201ENSMUST00000169295 2309 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rfx1P48377 Arhgap31-201ENSMUST00000023487 7964 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rfx1P48377 Tiprl-201ENSMUST00000043235 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rfx1P48377 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Rfx1P48377 Abcc10-204ENSMUST00000167360 4866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rfx1P48377 Gm37931-201ENSMUST00000194686 2866 ntBASIC14.32□□□□□ -0.12
Rfx1P48377 Atp1a3-201ENSMUST00000080882 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rfx1P48377 Polm-201ENSMUST00000020767 2924 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 Dnajc5-203ENSMUST00000108797 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 Pappa-201ENSMUST00000084501 11027 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 Ttc17-203ENSMUST00000111237 4409 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Rfx1P48377 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 Rbms2-201ENSMUST00000092033 1481 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 4833420G17Rik-204ENSMUST00000225186 2627 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Rfx1P48377 Adora1-203ENSMUST00000169927 4581 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Rfx1P48377 Tbc1d14-204ENSMUST00000130417 2665 ntTSL 5 BASIC14.31□□□□□ -0.12
Rfx1P48377 Mccc1os-202ENSMUST00000137198 2686 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 Pfkp-201ENSMUST00000021614 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 Csk-204ENSMUST00000215396 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 Iqsec2-201ENSMUST00000096275 5252 ntAPPRIS P3 TSL 2 BASIC14.31□□□□□ -0.12
Rfx1P48377 Elavl2-204ENSMUST00000107110 3671 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 Grhl2-201ENSMUST00000022895 4947 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 Slc12a9-201ENSMUST00000039991 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 Slc45a2-201ENSMUST00000117100 2983 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC14.31□□□□□ -0.12
Rfx1P48377 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC14.31□□□□□ -0.12
Rfx1P48377 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 Gm31048-201ENSMUST00000196103 1061 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC14.31□□□□□ -0.12
Rfx1P48377 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Rfx1P48377 Clvs2-204ENSMUST00000161692 4283 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
Rfx1P48377 Lynx1-201ENSMUST00000023259 4023 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 Myo7a-203ENSMUST00000107127 6806 ntAPPRIS P3 TSL 5 BASIC14.31□□□□□ -0.12
Rfx1P48377 Fn1-216ENSMUST00000189821 7410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 Tspyl4-201ENSMUST00000047935 3879 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 71.5 ms