Protein–RNA interactions for Protein: P43488

Tnfsf4, Tumor necrosis factor ligand superfamily member 4, mousemouse

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf4P43488 Gm25043-201ENSMUST00000158604 212 ntBASIC11.59□□□□□ -0.55
Tnfsf4P43488 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Tnfsf4P43488 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC11.59□□□□□ -0.55
Tnfsf4P43488 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
Tnfsf4P43488 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
Tnfsf4P43488 Gm2546-201ENSMUST00000182630 991 ntBASIC11.59□□□□□ -0.55
Tnfsf4P43488 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC11.59□□□□□ -0.55
Tnfsf4P43488 Gm37748-201ENSMUST00000194379 1140 ntBASIC11.59□□□□□ -0.55
Tnfsf4P43488 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC11.59□□□□□ -0.55
Tnfsf4P43488 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Tnfsf4P43488 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Tnfsf4P43488 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC11.59□□□□□ -0.55
Tnfsf4P43488 Gm9004-201ENSMUST00000218739 1222 ntBASIC11.59□□□□□ -0.55
Tnfsf4P43488 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Tnfsf4P43488 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
Tnfsf4P43488 Rpl19-202ENSMUST00000092425 737 ntAPPRIS ALT1 TSL 3 BASIC11.59□□□□□ -0.55
Tnfsf4P43488 Xkr6-202ENSMUST00000120820 1702 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Tnfsf4P43488 D030045P18Rik-204ENSMUST00000215085 2186 ntTSL 5 BASIC11.59□□□□□ -0.55
Tnfsf4P43488 Nrd1-203ENSMUST00000106644 3784 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
Tnfsf4P43488 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC11.59□□□□□ -0.55
Tnfsf4P43488 Gm26615-201ENSMUST00000181522 3201 ntTSL 2 BASIC11.59□□□□□ -0.55
Tnfsf4P43488 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Tnfsf4P43488 Odf2l-201ENSMUST00000029920 2239 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Tnfsf4P43488 Wdr26-208ENSMUST00000162963 6452 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
Tnfsf4P43488 Fen1-202ENSMUST00000116542 2100 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Tnfsf4P43488 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
Tnfsf4P43488 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Tnfsf4P43488 Golga2-202ENSMUST00000100194 4373 ntAPPRIS P4 TSL 1 (best) BASIC11.58□□□□□ -0.55
Tnfsf4P43488 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC11.58□□□□□ -0.55
Tnfsf4P43488 March7-202ENSMUST00000102747 2271 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.55
Tnfsf4P43488 Rprd1b-203ENSMUST00000109518 4399 ntTSL 1 (best) BASIC11.58□□□□□ -0.55
Tnfsf4P43488 Zmynd8-203ENSMUST00000099084 5232 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Zbtb44-201ENSMUST00000115222 8861 ntTSL 5 BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Gm19221-201ENSMUST00000221827 1477 ntBASIC11.58□□□□□ -0.56
Tnfsf4P43488 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Gm42498-201ENSMUST00000199981 1372 ntBASIC11.58□□□□□ -0.56
Tnfsf4P43488 AC124397.2-201ENSMUST00000225575 2215 ntBASIC11.58□□□□□ -0.56
Tnfsf4P43488 Maml3-201ENSMUST00000118075 5450 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Sh3tc1-201ENSMUST00000070203 4549 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Sertad2-201ENSMUST00000093292 5647 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Gm6023-201ENSMUST00000118217 606 ntBASIC11.58□□□□□ -0.56
Tnfsf4P43488 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Tnfsf4P43488 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
Tnfsf4P43488 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Gm5706-201ENSMUST00000181525 993 ntBASIC11.58□□□□□ -0.56
Tnfsf4P43488 Gm5597-201ENSMUST00000182353 1193 ntBASIC11.58□□□□□ -0.56
Tnfsf4P43488 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Gm37008-201ENSMUST00000195712 319 ntBASIC11.58□□□□□ -0.56
Tnfsf4P43488 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Tnfsf4P43488 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC11.58□□□□□ -0.56
Tnfsf4P43488 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Apbb2-216ENSMUST00000162366 6540 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Nrde2-201ENSMUST00000021596 3718 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Nras-201ENSMUST00000029445 4470 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Tnfsf4P43488 3830432H09Rik-202ENSMUST00000188909 2414 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Abcb8-201ENSMUST00000073076 2939 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Tnfsf4P43488 St6galnac5-201ENSMUST00000044278 5667 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Crkl-201ENSMUST00000006293 3863 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Iqsec2-201ENSMUST00000096275 5252 ntAPPRIS P3 TSL 2 BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Sema4c-208ENSMUST00000195620 3640 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Tnfsf4P43488 Zfand2a-202ENSMUST00000110851 3121 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Tnfsf4P43488 C530043K16Rik-201ENSMUST00000201865 3109 ntBASIC11.58□□□□□ -0.56
Tnfsf4P43488 Als2cl-206ENSMUST00000155014 5150 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Tnfsf4P43488 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Tnfsf4P43488 Rftn1-202ENSMUST00000113195 2385 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Tnfsf4P43488 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
Tnfsf4P43488 Olfr140-202ENSMUST00000111506 3449 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
Tnfsf4P43488 Gm8155-201ENSMUST00000216363 1612 ntBASIC11.57□□□□□ -0.56
Tnfsf4P43488 Gm9796-201ENSMUST00000062249 2250 ntBASIC11.57□□□□□ -0.56
Tnfsf4P43488 Gm19792-201ENSMUST00000222522 2021 ntTSL 5 BASIC11.57□□□□□ -0.56
Tnfsf4P43488 Csf1-201ENSMUST00000014743 4176 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
Tnfsf4P43488 Pabpc4-204ENSMUST00000106243 3111 ntAPPRIS ALT1 TSL 5 BASIC11.57□□□□□ -0.56
Tnfsf4P43488 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
Tnfsf4P43488 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Tnfsf4P43488 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Tnfsf4P43488 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Tnfsf4P43488 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Tnfsf4P43488 Gm12201-201ENSMUST00000120657 1234 ntBASIC11.57□□□□□ -0.56
Tnfsf4P43488 Gm14832-201ENSMUST00000121289 322 ntBASIC11.57□□□□□ -0.56
Tnfsf4P43488 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Tnfsf4P43488 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC11.57□□□□□ -0.56
Tnfsf4P43488 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Tnfsf4P43488 Gm8801-201ENSMUST00000173255 1064 ntBASIC11.57□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 48.4 ms