Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm9915-201ENSMUST00000066196 1383 ntBASIC15.53■□□□□ 0.08
Col18a1P39061 3830406C13Rik-209ENSMUST00000224389 2444 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Col18a1P39061 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col18a1P39061 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Col18a1P39061 Kcne3-202ENSMUST00000170954 1315 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col18a1P39061 Gm8968-201ENSMUST00000199133 1303 ntBASIC15.52■□□□□ 0.08
Col18a1P39061 Gm31816-202ENSMUST00000209591 1332 ntTSL 5 BASIC15.52■□□□□ 0.08
Col18a1P39061 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col18a1P39061 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col18a1P39061 Ldhd-201ENSMUST00000070004 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col18a1P39061 Mapk8-202ENSMUST00000111942 927 ntTSL 5 BASIC15.52■□□□□ 0.08
Col18a1P39061 Gm12009-201ENSMUST00000121361 1100 ntBASIC15.52■□□□□ 0.08
Col18a1P39061 Zfp133-ps-204ENSMUST00000149523 424 ntTSL 3 BASIC15.52■□□□□ 0.08
Col18a1P39061 Zfp655-204ENSMUST00000199003 601 ntTSL 2 BASIC15.52■□□□□ 0.08
Col18a1P39061 CT025531.1-201ENSMUST00000214534 622 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Col18a1P39061 Ifnl3-201ENSMUST00000078364 582 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col18a1P39061 Hax1-201ENSMUST00000079724 1139 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col18a1P39061 Ccdc30-203ENSMUST00000084307 989 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Col18a1P39061 Tmem208-202ENSMUST00000098453 950 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Col18a1P39061 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col18a1P39061 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col18a1P39061 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col18a1P39061 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
Col18a1P39061 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Col18a1P39061 Olfr541-203ENSMUST00000210357 1642 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
Col18a1P39061 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col18a1P39061 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col18a1P39061 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col18a1P39061 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col18a1P39061 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
Col18a1P39061 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
Col18a1P39061 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col18a1P39061 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col18a1P39061 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col18a1P39061 Pfkfb2-208ENSMUST00000187089 1690 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
Col18a1P39061 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col18a1P39061 Syk-202ENSMUST00000118756 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col18a1P39061 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col18a1P39061 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Col18a1P39061 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col18a1P39061 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col18a1P39061 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
Col18a1P39061 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC15.52■□□□□ 0.07
Col18a1P39061 Tnnt3-213ENSMUST00000105952 1040 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col18a1P39061 Tnnt3-215ENSMUST00000105954 1052 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col18a1P39061 Tnnt3-216ENSMUST00000105955 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col18a1P39061 Tnnt3-218ENSMUST00000105958 1050 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col18a1P39061 Tmem181c-ps-201ENSMUST00000115772 1288 ntBASIC15.52■□□□□ 0.07
Col18a1P39061 Gm4943-201ENSMUST00000132879 424 ntBASIC15.52■□□□□ 0.07
Col18a1P39061 H2al1i-201ENSMUST00000164729 318 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
Col18a1P39061 H2al1h-201ENSMUST00000177926 318 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
Col18a1P39061 Gm5808-201ENSMUST00000178090 357 ntBASIC15.52■□□□□ 0.07
Col18a1P39061 H2al1d-201ENSMUST00000178595 318 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
Col18a1P39061 H2al1c-201ENSMUST00000178806 318 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
Col18a1P39061 H2al1f-201ENSMUST00000179004 318 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
Col18a1P39061 Tnnt3-225ENSMUST00000179658 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col18a1P39061 Gm29543-201ENSMUST00000188138 967 ntBASIC15.52■□□□□ 0.07
Col18a1P39061 Ghrl-204ENSMUST00000203770 891 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col18a1P39061 Ghrl-205ENSMUST00000204163 447 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col18a1P39061 Gm5040-201ENSMUST00000218609 800 ntBASIC15.52■□□□□ 0.07
Col18a1P39061 AC155709.2-201ENSMUST00000219360 678 ntTSL 3 BASIC15.52■□□□□ 0.07
Col18a1P39061 Gm18065-201ENSMUST00000221395 526 ntBASIC15.52■□□□□ 0.07
Col18a1P39061 Tnnt3-202ENSMUST00000078497 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col18a1P39061 Efna1-203ENSMUST00000118860 1403 ntTSL 5 BASIC15.51■□□□□ 0.07
Col18a1P39061 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
Col18a1P39061 Slc44a4-202ENSMUST00000169230 2246 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Col18a1P39061 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Col18a1P39061 Usp2-208ENSMUST00000177054 2370 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Col18a1P39061 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col18a1P39061 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col18a1P39061 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col18a1P39061 Gm6268-201ENSMUST00000115253 1453 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Col18a1P39061 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col18a1P39061 Cd300ld5-201ENSMUST00000100239 852 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col18a1P39061 Cd300ld4-201ENSMUST00000100240 852 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col18a1P39061 Upp1-202ENSMUST00000101525 1157 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col18a1P39061 Sh3gl2-202ENSMUST00000107184 671 ntTSL 2 BASIC15.51■□□□□ 0.07
Col18a1P39061 Gm14398-201ENSMUST00000117287 1073 ntBASIC15.51■□□□□ 0.07
Col18a1P39061 Gm15912-201ENSMUST00000128914 578 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Col18a1P39061 Gm20671-201ENSMUST00000144673 1731 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Col18a1P39061 Gm16165-201ENSMUST00000160140 795 ntBASIC15.51■□□□□ 0.07
Col18a1P39061 Gm17115-201ENSMUST00000164075 885 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Col18a1P39061 5730422E09Rik-201ENSMUST00000180733 1740 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Col18a1P39061 Gm5210-201ENSMUST00000182150 1010 ntBASIC15.51■□□□□ 0.07
Col18a1P39061 Zcwpw2-203ENSMUST00000187803 372 ntBASIC15.51■□□□□ 0.07
Col18a1P39061 Fkbp6-202ENSMUST00000201534 1287 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col18a1P39061 Gm42732-201ENSMUST00000202887 1197 ntBASIC15.51■□□□□ 0.07
Col18a1P39061 Gm6352-201ENSMUST00000203583 1134 ntBASIC15.51■□□□□ 0.07
Col18a1P39061 Gm6653-201ENSMUST00000218063 1288 ntBASIC15.51■□□□□ 0.07
Col18a1P39061 Gm32872-201ENSMUST00000220037 205 ntTSL 3 BASIC15.51■□□□□ 0.07
Col18a1P39061 AC154407.1-201ENSMUST00000226777 526 ntBASIC15.51■□□□□ 0.07
Col18a1P39061 Nsmce2-203ENSMUST00000227173 1122 ntBASIC15.51■□□□□ 0.07
Col18a1P39061 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col18a1P39061 Ccl27a-201ENSMUST00000074387 405 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col18a1P39061 Cd300ld3-201ENSMUST00000092459 852 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col18a1P39061 Gm5608-201ENSMUST00000210253 2290 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Col18a1P39061 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col18a1P39061 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col18a1P39061 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Col18a1P39061 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms