Protein–RNA interactions for Protein: P22518

Clk1, Dual specificity protein kinase CLK1, mousemouse

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk1P22518 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Clk1P22518 Tmcc2-201ENSMUST00000045473 3410 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Clk1P22518 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Clk1P22518 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Clk1P22518 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Clk1P22518 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Clk1P22518 Rnf165-202ENSMUST00000182024 4309 ntTSL 5 BASIC11.31□□□□□ -0.6
Clk1P22518 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Clk1P22518 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Clk1P22518 Gm4366-201ENSMUST00000201488 1342 ntBASIC11.31□□□□□ -0.6
Clk1P22518 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Clk1P22518 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
Clk1P22518 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Clk1P22518 Gm10684-201ENSMUST00000098827 2203 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Clk1P22518 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Clk1P22518 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Clk1P22518 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clk1P22518 Ptcd1-201ENSMUST00000031628 3087 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clk1P22518 Ambra1-204ENSMUST00000111316 5063 ntTSL 5 BASIC11.3□□□□□ -0.6
Clk1P22518 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clk1P22518 Frmd4a-202ENSMUST00000091497 6208 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clk1P22518 Tank-203ENSMUST00000112495 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clk1P22518 Pknox1-206ENSMUST00000176701 4232 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clk1P22518 BC004004-201ENSMUST00000064709 2803 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clk1P22518 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clk1P22518 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clk1P22518 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC11.3□□□□□ -0.6
Clk1P22518 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Clk1P22518 Gm13392-201ENSMUST00000117708 150 ntBASIC11.3□□□□□ -0.6
Clk1P22518 Gm11597-201ENSMUST00000121423 964 ntBASIC11.3□□□□□ -0.6
Clk1P22518 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Clk1P22518 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Clk1P22518 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC11.3□□□□□ -0.6
Clk1P22518 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Clk1P22518 Gm37201-201ENSMUST00000191845 523 ntBASIC11.3□□□□□ -0.6
Clk1P22518 Gm38158-201ENSMUST00000194617 339 ntBASIC11.3□□□□□ -0.6
Clk1P22518 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC11.3□□□□□ -0.6
Clk1P22518 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC11.3□□□□□ -0.6
Clk1P22518 Gm44958-201ENSMUST00000203734 736 ntBASIC11.3□□□□□ -0.6
Clk1P22518 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Clk1P22518 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clk1P22518 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Clk1P22518 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Clk1P22518 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clk1P22518 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC11.3□□□□□ -0.6
Clk1P22518 Mitf-201ENSMUST00000043628 1921 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Clk1P22518 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC11.3□□□□□ -0.6
Clk1P22518 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clk1P22518 Hk3-201ENSMUST00000052949 3219 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clk1P22518 Khnyn-201ENSMUST00000022831 3898 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clk1P22518 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC11.3□□□□□ -0.6
Clk1P22518 Epm2aip1-202ENSMUST00000135807 4245 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
Clk1P22518 Cdc20b-203ENSMUST00000181117 1608 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Clk1P22518 Wnt7b-203ENSMUST00000167968 3408 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Clk1P22518 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clk1P22518 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clk1P22518 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clk1P22518 Gm6203-201ENSMUST00000209575 1342 ntBASIC11.3□□□□□ -0.6
Clk1P22518 Gm5780-201ENSMUST00000217774 1834 ntBASIC11.3□□□□□ -0.6
Clk1P22518 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Clk1P22518 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clk1P22518 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clk1P22518 Sox8-201ENSMUST00000025003 3000 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clk1P22518 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clk1P22518 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Clk1P22518 Mknk1-202ENSMUST00000106513 2552 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clk1P22518 Gm2128-201ENSMUST00000108009 2560 ntBASIC11.29□□□□□ -0.6
Clk1P22518 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Clk1P22518 Prrc2b-202ENSMUST00000069817 10671 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clk1P22518 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Clk1P22518 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Clk1P22518 Nsun7-204ENSMUST00000202994 3632 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Clk1P22518 Bod1l-204ENSMUST00000202908 10399 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Clk1P22518 Ces4a-201ENSMUST00000161289 2433 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clk1P22518 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clk1P22518 Zfp251-201ENSMUST00000080406 3497 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clk1P22518 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Clk1P22518 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clk1P22518 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Clk1P22518 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clk1P22518 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clk1P22518 Gp1ba-202ENSMUST00000108551 2480 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clk1P22518 Tmem161a-201ENSMUST00000002413 3018 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clk1P22518 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clk1P22518 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Clk1P22518 Sqor-202ENSMUST00000110506 1985 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clk1P22518 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Clk1P22518 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clk1P22518 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clk1P22518 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC11.29□□□□□ -0.6
Clk1P22518 Gm11222-201ENSMUST00000119005 738 ntBASIC11.29□□□□□ -0.6
Clk1P22518 Gm13297-201ENSMUST00000120205 934 ntBASIC11.29□□□□□ -0.6
Clk1P22518 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Clk1P22518 Gm23119-201ENSMUST00000158610 140 ntBASIC11.29□□□□□ -0.6
Clk1P22518 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC11.29□□□□□ -0.6
Clk1P22518 Gm9022-201ENSMUST00000182482 992 ntBASIC11.29□□□□□ -0.6
Clk1P22518 Gm29396-201ENSMUST00000185659 716 ntBASIC11.29□□□□□ -0.6
Clk1P22518 Gm5850-201ENSMUST00000192923 1206 ntBASIC11.29□□□□□ -0.6
Clk1P22518 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC11.29□□□□□ -0.6
Clk1P22518 Morn2-202ENSMUST00000227729 656 ntBASIC11.29□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 50.5 ms