Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Msx1P13297 Gm16440-201ENSMUST00000100900 1089 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
Msx1P13297 Gm5795-201ENSMUST00000100920 984 ntAPPRIS P2 TSL 5 BASIC11.63□□□□□ -0.55
Msx1P13297 Dmrtc1b-201ENSMUST00000101324 1200 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
Msx1P13297 Gm11564-201ENSMUST00000105055 691 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
Msx1P13297 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Msx1P13297 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC11.63□□□□□ -0.55
Msx1P13297 Prl8a6-203ENSMUST00000110355 843 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Msx1P13297 Gm21103-201ENSMUST00000112737 984 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Msx1P13297 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC11.63□□□□□ -0.55
Msx1P13297 Tmed5-203ENSMUST00000117759 482 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Msx1P13297 Gm12286-201ENSMUST00000119246 1002 ntBASIC11.63□□□□□ -0.55
Msx1P13297 Gm14760-201ENSMUST00000121831 999 ntBASIC11.63□□□□□ -0.55
Msx1P13297 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Msx1P13297 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC11.63□□□□□ -0.55
Msx1P13297 Gm14291-201ENSMUST00000143645 804 ntTSL 2 BASIC11.63□□□□□ -0.55
Msx1P13297 Gm16036-201ENSMUST00000150385 1112 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Msx1P13297 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Msx1P13297 Gm3047-201ENSMUST00000164069 822 ntAPPRIS P5 TSL 5 BASIC11.63□□□□□ -0.55
Msx1P13297 Gm3760-201ENSMUST00000167475 804 ntBASIC11.63□□□□□ -0.55
Msx1P13297 Gm3029-201ENSMUST00000168306 984 ntAPPRIS P5 TSL 5 BASIC11.63□□□□□ -0.55
Msx1P13297 Gm3685-201ENSMUST00000169215 984 ntAPPRIS P5 TSL 5 BASIC11.63□□□□□ -0.55
Msx1P13297 Gm7876-201ENSMUST00000169465 984 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Msx1P13297 Gm3043-201ENSMUST00000170639 821 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Msx1P13297 Gm26763-201ENSMUST00000180968 1093 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Msx1P13297 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC11.63□□□□□ -0.55
Msx1P13297 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC11.63□□□□□ -0.55
Msx1P13297 Gm37201-201ENSMUST00000191845 523 ntBASIC11.63□□□□□ -0.55
Msx1P13297 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC11.63□□□□□ -0.55
Msx1P13297 Gm18393-201ENSMUST00000208349 1131 ntBASIC11.63□□□□□ -0.55
Msx1P13297 Pmis2-201ENSMUST00000051495 699 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Msx1P13297 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Msx1P13297 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Msx1P13297 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Msx1P13297 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Msx1P13297 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Msx1P13297 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Msx1P13297 Rangap1-202ENSMUST00000170134 3002 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Msx1P13297 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Msx1P13297 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC11.63□□□□□ -0.55
Msx1P13297 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
Msx1P13297 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC11.63□□□□□ -0.55
Msx1P13297 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Msx1P13297 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC11.63□□□□□ -0.55
Msx1P13297 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Msx1P13297 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Msx1P13297 Gm18227-201ENSMUST00000211082 1468 ntBASIC11.63□□□□□ -0.55
Msx1P13297 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Msx1P13297 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC11.62□□□□□ -0.55
Msx1P13297 Timm21-201ENSMUST00000025547 1315 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Zp3-201ENSMUST00000005073 1323 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Msx1P13297 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Pafah1b2-201ENSMUST00000172450 6873 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Msx1P13297 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Gm37827-201ENSMUST00000194486 1542 ntBASIC11.62□□□□□ -0.55
Msx1P13297 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Msx1P13297 Clec12b-201ENSMUST00000032261 1521 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Gm24231-201ENSMUST00000104315 133 ntBASIC11.62□□□□□ -0.55
Msx1P13297 Gm12073-201ENSMUST00000117382 524 ntBASIC11.62□□□□□ -0.55
Msx1P13297 Zar1l-201ENSMUST00000118769 895 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Gm7113-201ENSMUST00000120477 958 ntBASIC11.62□□□□□ -0.55
Msx1P13297 Gm6027-201ENSMUST00000121467 756 ntBASIC11.62□□□□□ -0.55
Msx1P13297 Gm14665-201ENSMUST00000122294 557 ntBASIC11.62□□□□□ -0.55
Msx1P13297 Gm25843-201ENSMUST00000122582 314 ntBASIC11.62□□□□□ -0.55
Msx1P13297 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC11.62□□□□□ -0.55
Msx1P13297 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC11.62□□□□□ -0.55
Msx1P13297 Gm16172-201ENSMUST00000156224 682 ntTSL 3 BASIC11.62□□□□□ -0.55
Msx1P13297 Gm16285-201ENSMUST00000162999 347 ntBASIC11.62□□□□□ -0.55
Msx1P13297 Gm17063-201ENSMUST00000168135 456 ntBASIC11.62□□□□□ -0.55
Msx1P13297 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC11.62□□□□□ -0.55
Msx1P13297 Gm9211-201ENSMUST00000182882 975 ntBASIC11.62□□□□□ -0.55
Msx1P13297 Gm43952-201ENSMUST00000203765 751 ntBASIC11.62□□□□□ -0.55
Msx1P13297 Gm5051-201ENSMUST00000204085 485 ntBASIC11.62□□□□□ -0.55
Msx1P13297 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Gm45224-201ENSMUST00000208203 414 ntBASIC11.62□□□□□ -0.55
Msx1P13297 Gm44545-201ENSMUST00000208262 746 ntBASIC11.62□□□□□ -0.55
Msx1P13297 Gm45579-201ENSMUST00000209367 887 ntTSL 5 BASIC11.62□□□□□ -0.55
Msx1P13297 Gm45433-201ENSMUST00000209386 247 ntBASIC11.62□□□□□ -0.55
Msx1P13297 Hrc-202ENSMUST00000211327 607 ntTSL 5 BASIC11.62□□□□□ -0.55
Msx1P13297 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC11.62□□□□□ -0.55
Msx1P13297 Gm18730-201ENSMUST00000218038 343 ntBASIC11.62□□□□□ -0.55
Msx1P13297 AC154222.2-201ENSMUST00000225848 607 ntBASIC11.62□□□□□ -0.55
Msx1P13297 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Klk1b27-201ENSMUST00000079859 889 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Clec4b2-201ENSMUST00000088455 1174 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Gm37785-201ENSMUST00000195783 2408 ntBASIC11.62□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 62.9 ms