Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm28356-201ENSMUST00000186941 927 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
Hoxd3P09027 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
Hoxd3P09027 1700047N06Rik-201ENSMUST00000194474 920 ntBASIC9.57□□□□□ -0.88
Hoxd3P09027 Rprl1-202ENSMUST00000198476 238 ntBASIC9.57□□□□□ -0.88
Hoxd3P09027 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hoxd3P09027 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC9.57□□□□□ -0.88
Hoxd3P09027 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC9.57□□□□□ -0.88
Hoxd3P09027 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hoxd3P09027 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC9.57□□□□□ -0.88
Hoxd3P09027 Gm21089-201ENSMUST00000215843 325 ntBASIC9.57□□□□□ -0.88
Hoxd3P09027 Zkscan3-207ENSMUST00000223831 2101 ntBASIC9.57□□□□□ -0.88
Hoxd3P09027 AC174797.4-201ENSMUST00000225510 347 ntBASIC9.57□□□□□ -0.88
Hoxd3P09027 Cox20-201ENSMUST00000027781 471 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hoxd3P09027 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hoxd3P09027 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hoxd3P09027 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hoxd3P09027 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hoxd3P09027 Gm10058-201ENSMUST00000079797 893 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hoxd3P09027 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hoxd3P09027 Trappc3l-201ENSMUST00000095758 1185 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hoxd3P09027 Olfr1277-201ENSMUST00000099619 962 ntAPPRIS P1 BASIC9.57□□□□□ -0.88
Hoxd3P09027 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hoxd3P09027 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
Hoxd3P09027 Gm45342-201ENSMUST00000210903 1363 ntBASIC9.57□□□□□ -0.88
Hoxd3P09027 LMLN2-201ENSMUST00000224691 2342 ntAPPRIS P5 BASIC9.57□□□□□ -0.88
Hoxd3P09027 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hoxd3P09027 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hoxd3P09027 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC9.57□□□□□ -0.88
Hoxd3P09027 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hoxd3P09027 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC9.57□□□□□ -0.88
Hoxd3P09027 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC9.57□□□□□ -0.88
Hoxd3P09027 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hoxd3P09027 Sptbn2-201ENSMUST00000008991 8251 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hoxd3P09027 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hoxd3P09027 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC9.57□□□□□ -0.88
Hoxd3P09027 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hoxd3P09027 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hoxd3P09027 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 4933404K08Rik-201ENSMUST00000156977 1434 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 Kcne2-202ENSMUST00000113971 1632 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 AC122197.2-201ENSMUST00000219196 1635 ntBASIC9.56□□□□□ -0.88
Hoxd3P09027 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC9.56□□□□□ -0.88
Hoxd3P09027 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 Pex5-205ENSMUST00000112532 3148 ntAPPRIS P4 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 Sec16a-202ENSMUST00000114082 8797 ntAPPRIS ALT2 TSL 5 BASIC9.56□□□□□ -0.88
Hoxd3P09027 Mrvi1-202ENSMUST00000125758 5953 ntAPPRIS ALT2 TSL 2 BASIC9.56□□□□□ -0.88
Hoxd3P09027 Maml3-201ENSMUST00000118075 5450 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 Gm42480-201ENSMUST00000198434 2595 ntBASIC9.56□□□□□ -0.88
Hoxd3P09027 Myo7a-204ENSMUST00000107128 7506 ntAPPRIS ALT2 TSL 5 BASIC9.56□□□□□ -0.88
Hoxd3P09027 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC9.56□□□□□ -0.88
Hoxd3P09027 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC9.56□□□□□ -0.88
Hoxd3P09027 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC9.56□□□□□ -0.88
Hoxd3P09027 Gm43417-201ENSMUST00000201586 5207 ntBASIC9.56□□□□□ -0.88
Hoxd3P09027 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 Acly-203ENSMUST00000107389 4426 ntAPPRIS ALT1 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC9.56□□□□□ -0.88
Hoxd3P09027 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC9.56□□□□□ -0.88
Hoxd3P09027 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC9.56□□□□□ -0.88
Hoxd3P09027 Gm12015-201ENSMUST00000117065 843 ntBASIC9.56□□□□□ -0.88
Hoxd3P09027 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC9.56□□□□□ -0.88
Hoxd3P09027 Cmtm1-201ENSMUST00000159039 1130 ntAPPRIS P2 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 1700129C05Rik-203ENSMUST00000162271 325 ntAPPRIS ALT2 TSL 3 BASIC9.56□□□□□ -0.88
Hoxd3P09027 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC9.56□□□□□ -0.88
Hoxd3P09027 Gm5070-201ENSMUST00000177599 862 ntBASIC9.56□□□□□ -0.88
Hoxd3P09027 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC9.56□□□□□ -0.88
Hoxd3P09027 4930471M09Rik-201ENSMUST00000181849 1112 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 Gm2260-201ENSMUST00000184965 657 ntBASIC9.56□□□□□ -0.88
Hoxd3P09027 Gm42937-201ENSMUST00000197360 752 ntBASIC9.56□□□□□ -0.88
Hoxd3P09027 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 Rassf5-205ENSMUST00000212202 958 ntTSL 5 BASIC9.56□□□□□ -0.88
Hoxd3P09027 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC9.56□□□□□ -0.88
Hoxd3P09027 Gm32468-201ENSMUST00000214199 1040 ntTSL 5 BASIC9.56□□□□□ -0.88
Hoxd3P09027 AC124171.1-201ENSMUST00000221151 567 ntTSL 5 BASIC9.56□□□□□ -0.88
Hoxd3P09027 AC154634.2-201ENSMUST00000225983 1184 ntBASIC9.56□□□□□ -0.88
Hoxd3P09027 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC9.56□□□□□ -0.88
Hoxd3P09027 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC9.56□□□□□ -0.88
Hoxd3P09027 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 Gm26035-201ENSMUST00000083065 308 ntBASIC9.56□□□□□ -0.88
Hoxd3P09027 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC9.56□□□□□ -0.88
Hoxd3P09027 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC9.56□□□□□ -0.88
Hoxd3P09027 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hoxd3P09027 Epb41-207ENSMUST00000105975 5235 ntAPPRIS ALT2 TSL 5 BASIC9.56□□□□□ -0.88
Hoxd3P09027 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC9.56□□□□□ -0.88
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms