Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Lima1Q9ERG0 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Lima1Q9ERG0 AC093022.4-203ENSMUST00000228523 2657 ntBASIC11.88□□□□□ -0.51
Lima1Q9ERG0 Fip1l1-204ENSMUST00000113536 4769 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Lima1Q9ERG0 Dmbt1-202ENSMUST00000208311 6272 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Lima1Q9ERG0 Vcp-201ENSMUST00000030164 3316 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Lima1Q9ERG0 Herc4-201ENSMUST00000020258 3898 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Lpar1-203ENSMUST00000107571 3543 ntAPPRIS P3 TSL 5 BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Mcf2l-203ENSMUST00000110866 5108 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Knop1-206ENSMUST00000126792 3253 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Pcif1-201ENSMUST00000041643 5772 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Trim35-201ENSMUST00000022623 3678 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Gm37827-201ENSMUST00000194486 1542 ntBASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Vill-202ENSMUST00000074734 2440 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Lsamp-206ENSMUST00000187695 3411 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Psapl1-201ENSMUST00000052224 2548 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Traf7-202ENSMUST00000088464 2504 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Gm27514-201ENSMUST00000183692 110 ntBASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Adora1-203ENSMUST00000169927 4581 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Cpn2-201ENSMUST00000064856 4583 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Slc17a5-202ENSMUST00000117645 3114 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 4931406C07Rik-202ENSMUST00000178977 2650 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Ftsj1-201ENSMUST00000033513 3425 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Stxbp5l-204ENSMUST00000114781 3544 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Slc45a2-201ENSMUST00000117100 2983 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Gm5475-202ENSMUST00000148928 2320 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Add1-202ENSMUST00000052836 2337 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Hhipl2-201ENSMUST00000065900 2525 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Chl1-204ENSMUST00000203912 4628 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lima1Q9ERG0 Galnt10-201ENSMUST00000066987 4715 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Tmem161a-201ENSMUST00000002413 3018 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Robo4-201ENSMUST00000102895 3226 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Gm7789-202ENSMUST00000211273 1400 ntBASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Pip5k1a-206ENSMUST00000107236 3618 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Astn1-211ENSMUST00000195311 3642 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Unkl-204ENSMUST00000160896 4787 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Mroh7-201ENSMUST00000106770 4346 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 St6galnac5-201ENSMUST00000044278 5667 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Fubp1-209ENSMUST00000198227 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Fxr1-206ENSMUST00000198051 2127 ntTSL 5 BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Serinc4-202ENSMUST00000110613 2240 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Crybg3-201ENSMUST00000044604 5231 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 D130043K22Rik-201ENSMUST00000006893 4973 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Gm20425-201ENSMUST00000166836 3028 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Gm8738-201ENSMUST00000172606 329 ntBASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 BC067074-203ENSMUST00000136755 8274 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Csk-204ENSMUST00000215396 2390 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Kirrel3-209ENSMUST00000190549 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Mmp25-201ENSMUST00000024696 3373 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Banp-204ENSMUST00000170857 5444 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Mfrp-201ENSMUST00000034654 4316 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Gm26735-201ENSMUST00000180992 2649 ntTSL 5 BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Bpi-201ENSMUST00000065039 1926 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Map4-214ENSMUST00000199498 4055 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Lima1Q9ERG0 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Cntnap1-201ENSMUST00000103109 5440 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Vmn1r45-202ENSMUST00000226167 2893 ntBASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Plekhg2-201ENSMUST00000094644 4623 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Frmpd2-203ENSMUST00000208577 5192 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Fads6-201ENSMUST00000056153 4951 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Mpp4-204ENSMUST00000186477 1885 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms