Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Gabpb1-204ENSMUST00000103227 2751 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 Dhx37-201ENSMUST00000169485 4760 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sf3b1Q99NB9 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Fam227a-202ENSMUST00000109646 1896 ntTSL 5 BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Col14a1-203ENSMUST00000110221 5679 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Krtap4-8-201ENSMUST00000107439 983 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Cd27-203ENSMUST00000112282 588 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Gm27390-201ENSMUST00000184516 176 ntBASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Ighv1-60-201ENSMUST00000195816 405 ntBASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Gm5705-201ENSMUST00000066241 711 ntBASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Cthrc1-201ENSMUST00000067072 1166 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 AC122840.1-201ENSMUST00000220915 3334 ntBASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Nupl1-206ENSMUST00000225111 2936 ntBASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 Odf2-208ENSMUST00000113763 2364 ntAPPRIS P3 TSL 5 BASIC12.78□□□□□ -0.36
Sf3b1Q99NB9 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sf3b1Q99NB9 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC12.77□□□□□ -0.36
Sf3b1Q99NB9 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Sf3b1Q99NB9 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sf3b1Q99NB9 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sf3b1Q99NB9 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Sf3b1Q99NB9 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sf3b1Q99NB9 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sf3b1Q99NB9 Paupar-201ENSMUST00000194826 3482 ntBASIC12.77□□□□□ -0.36
Sf3b1Q99NB9 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC12.77□□□□□ -0.36
Sf3b1Q99NB9 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
Sf3b1Q99NB9 Ibsp-201ENSMUST00000031246 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sf3b1Q99NB9 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC12.77□□□□□ -0.36
Sf3b1Q99NB9 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Sf3b1Q99NB9 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Sf3b1Q99NB9 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sf3b1Q99NB9 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sf3b1Q99NB9 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC12.77□□□□□ -0.37
Sf3b1Q99NB9 Gm15131-201ENSMUST00000119124 595 ntBASIC12.77□□□□□ -0.37
Sf3b1Q99NB9 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC12.77□□□□□ -0.37
Sf3b1Q99NB9 Rpl31-202ENSMUST00000178079 487 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
Sf3b1Q99NB9 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC12.77□□□□□ -0.37
Sf3b1Q99NB9 Cryab-201ENSMUST00000034562 946 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sf3b1Q99NB9 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sf3b1Q99NB9 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sf3b1Q99NB9 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sf3b1Q99NB9 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Sf3b1Q99NB9 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sf3b1Q99NB9 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sf3b1Q99NB9 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC12.77□□□□□ -0.37
Sf3b1Q99NB9 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Sf3b1Q99NB9 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sf3b1Q99NB9 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sf3b1Q99NB9 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sf3b1Q99NB9 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sf3b1Q99NB9 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sf3b1Q99NB9 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sf3b1Q99NB9 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sf3b1Q99NB9 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Sf3b1Q99NB9 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 41.7 ms