Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Clp1Q99LI9 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Clp1Q99LI9 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Clp1Q99LI9 Cpsf4l-202ENSMUST00000100248 1375 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Clp1Q99LI9 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Clp1Q99LI9 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Clp1Q99LI9 Gpr153-201ENSMUST00000055754 3757 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Clp1Q99LI9 Gm45576-201ENSMUST00000210981 1322 ntTSL 5 BASIC12.69□□□□□ -0.38
Clp1Q99LI9 Gm43447-201ENSMUST00000198471 1535 ntBASIC12.69□□□□□ -0.38
Clp1Q99LI9 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Clp1Q99LI9 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC12.69□□□□□ -0.38
Clp1Q99LI9 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Clp1Q99LI9 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Clp1Q99LI9 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Clp1Q99LI9 Vmn1r207-ps-201ENSMUST00000119931 1073 ntBASIC12.69□□□□□ -0.38
Clp1Q99LI9 Gm14236-201ENSMUST00000142374 872 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Clp1Q99LI9 Gm12962-202ENSMUST00000144212 691 ntTSL 2 BASIC12.69□□□□□ -0.38
Clp1Q99LI9 Rpain-201ENSMUST00000018593 1100 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Clp1Q99LI9 Gm9136-201ENSMUST00000193368 454 ntBASIC12.69□□□□□ -0.38
Clp1Q99LI9 Gm19331-201ENSMUST00000193799 1092 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Clp1Q99LI9 Gm17931-201ENSMUST00000208132 634 ntBASIC12.69□□□□□ -0.38
Clp1Q99LI9 Gm45574-201ENSMUST00000210921 331 ntBASIC12.69□□□□□ -0.38
Clp1Q99LI9 AC160028.1-201ENSMUST00000219645 1095 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Clp1Q99LI9 Gm46336-201ENSMUST00000221894 279 ntTSL 5 BASIC12.69□□□□□ -0.38
Clp1Q99LI9 Nmur1-201ENSMUST00000027440 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Clp1Q99LI9 Gbgt1-201ENSMUST00000028172 1084 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Clp1Q99LI9 Taar9-201ENSMUST00000041180 1047 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Clp1Q99LI9 Olfr584-201ENSMUST00000098210 964 ntBASIC12.69□□□□□ -0.38
Clp1Q99LI9 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Clp1Q99LI9 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Clp1Q99LI9 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Clp1Q99LI9 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Clp1Q99LI9 CAAA01216754.1-201ENSMUST00000215882 1836 ntBASIC12.69□□□□□ -0.38
Clp1Q99LI9 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Clp1Q99LI9 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Clp1Q99LI9 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Clp1Q99LI9 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Clp1Q99LI9 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Clp1Q99LI9 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Clp1Q99LI9 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Clp1Q99LI9 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Clp1Q99LI9 Gm38376-201ENSMUST00000195493 2253 ntBASIC12.68□□□□□ -0.38
Clp1Q99LI9 Gm36970-201ENSMUST00000193688 1859 ntBASIC12.68□□□□□ -0.38
Clp1Q99LI9 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Clp1Q99LI9 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Clp1Q99LI9 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Clp1Q99LI9 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Clp1Q99LI9 Spdye4a-203ENSMUST00000195900 1496 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Clp1Q99LI9 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Clp1Q99LI9 Rffl-205ENSMUST00000103218 1264 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Clp1Q99LI9 Gm23272-201ENSMUST00000104053 129 ntBASIC12.68□□□□□ -0.38
Clp1Q99LI9 Gm25063-201ENSMUST00000104666 94 ntBASIC12.68□□□□□ -0.38
Clp1Q99LI9 Ifna2-201ENSMUST00000105147 1032 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Clp1Q99LI9 Gm12106-201ENSMUST00000116006 1200 ntBASIC12.68□□□□□ -0.38
Clp1Q99LI9 Gm11801-201ENSMUST00000117807 746 ntBASIC12.68□□□□□ -0.38
Clp1Q99LI9 Gm11783-201ENSMUST00000119549 885 ntBASIC12.68□□□□□ -0.38
Clp1Q99LI9 Churc1-203ENSMUST00000126408 462 ntTSL 2 BASIC12.68□□□□□ -0.38
Clp1Q99LI9 Gm20420-201ENSMUST00000173178 639 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Clp1Q99LI9 Gm29410-201ENSMUST00000188383 694 ntBASIC12.68□□□□□ -0.38
Clp1Q99LI9 Gm37800-202ENSMUST00000193667 553 ntTSL 3 BASIC12.68□□□□□ -0.38
Clp1Q99LI9 Gm45113-201ENSMUST00000207518 165 ntBASIC12.68□□□□□ -0.38
Clp1Q99LI9 Gm35625-201ENSMUST00000210416 316 ntTSL 3 BASIC12.68□□□□□ -0.38
Clp1Q99LI9 CT009536.2-201ENSMUST00000225370 665 ntBASIC12.68□□□□□ -0.38
Clp1Q99LI9 AC165154.1-201ENSMUST00000226661 340 ntBASIC12.68□□□□□ -0.38
Clp1Q99LI9 Eny2-204ENSMUST00000226827 558 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Clp1Q99LI9 Sssca1-201ENSMUST00000025885 693 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Clp1Q99LI9 Higd2a-201ENSMUST00000026986 648 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Clp1Q99LI9 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Clp1Q99LI9 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Clp1Q99LI9 AC166836.1-201ENSMUST00000219933 1795 ntBASIC12.68□□□□□ -0.38
Clp1Q99LI9 Uba6-202ENSMUST00000113373 3504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Clp1Q99LI9 Lyplal1-201ENSMUST00000045388 1578 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Clp1Q99LI9 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Clp1Q99LI9 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Clp1Q99LI9 Gm6189-201ENSMUST00000164487 2082 ntBASIC12.68□□□□□ -0.38
Clp1Q99LI9 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Clp1Q99LI9 Slc22a15-201ENSMUST00000106928 6573 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Clp1Q99LI9 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Clp1Q99LI9 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Clp1Q99LI9 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Clp1Q99LI9 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Clp1Q99LI9 5530401A14Rik-201ENSMUST00000021044 1836 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Clp1Q99LI9 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Clp1Q99LI9 Gm45706-201ENSMUST00000213063 2136 ntBASIC12.67□□□□□ -0.38
Clp1Q99LI9 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Clp1Q99LI9 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Clp1Q99LI9 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Clp1Q99LI9 Brd4-202ENSMUST00000114475 2731 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Clp1Q99LI9 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Clp1Q99LI9 Gm25766-201ENSMUST00000104101 131 ntBASIC12.67□□□□□ -0.38
Clp1Q99LI9 Acrbp-204ENSMUST00000112413 672 ntTSL 2 BASIC12.67□□□□□ -0.38
Clp1Q99LI9 Rfc4-202ENSMUST00000115337 416 ntTSL 5 BASIC12.67□□□□□ -0.38
Clp1Q99LI9 Gm13047-201ENSMUST00000117116 815 ntBASIC12.67□□□□□ -0.38
Clp1Q99LI9 Gm11587-201ENSMUST00000128274 1120 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Clp1Q99LI9 Gm21972-201ENSMUST00000135197 776 ntAPPRIS P1 TSL 3 BASIC12.67□□□□□ -0.38
Clp1Q99LI9 4930557F10Rik-201ENSMUST00000155432 630 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Clp1Q99LI9 Gm26134-201ENSMUST00000178484 110 ntBASIC12.67□□□□□ -0.38
Clp1Q99LI9 Rbp2-202ENSMUST00000187905 611 ntAPPRIS P1 TSL 3 BASIC12.67□□□□□ -0.38
Clp1Q99LI9 Gm9116-201ENSMUST00000192400 1018 ntBASIC12.67□□□□□ -0.38
Clp1Q99LI9 Gm37981-201ENSMUST00000194280 535 ntBASIC12.67□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 68.2 ms