Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim56Q80VI1 Rgs6-211ENSMUST00000191107 1621 ntTSL 5 BASIC14.18□□□□□ -0.14
Trim56Q80VI1 Slamf7-204ENSMUST00000194531 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim56Q80VI1 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim56Q80VI1 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim56Q80VI1 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim56Q80VI1 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
Trim56Q80VI1 2410002F23Rik-203ENSMUST00000084937 2092 ntAPPRIS P2 TSL 2 BASIC14.18□□□□□ -0.14
Trim56Q80VI1 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim56Q80VI1 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC14.17□□□□□ -0.14
Trim56Q80VI1 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Trim56Q80VI1 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC14.17□□□□□ -0.14
Trim56Q80VI1 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim56Q80VI1 Fbln7-202ENSMUST00000110324 3228 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Trim56Q80VI1 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC14.17□□□□□ -0.14
Trim56Q80VI1 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim56Q80VI1 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim56Q80VI1 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Trim56Q80VI1 AC130671.2-201ENSMUST00000227224 1621 ntBASIC14.17□□□□□ -0.14
Trim56Q80VI1 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim56Q80VI1 Gm12196-201ENSMUST00000120954 262 ntBASIC14.17□□□□□ -0.14
Trim56Q80VI1 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC14.17□□□□□ -0.14
Trim56Q80VI1 B9d1os-201ENSMUST00000137010 674 ntBASIC14.17□□□□□ -0.14
Trim56Q80VI1 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC14.17□□□□□ -0.14
Trim56Q80VI1 Ctdspl-202ENSMUST00000172464 798 ntAPPRIS ALT1 TSL 5 BASIC14.17□□□□□ -0.14
Trim56Q80VI1 Gm4310-201ENSMUST00000177847 889 ntBASIC14.17□□□□□ -0.14
Trim56Q80VI1 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trim56Q80VI1 Gm9034-201ENSMUST00000182071 1005 ntBASIC14.17□□□□□ -0.14
Trim56Q80VI1 Gm9192-201ENSMUST00000183221 985 ntBASIC14.17□□□□□ -0.14
Trim56Q80VI1 Gm38228-201ENSMUST00000193169 1293 ntBASIC14.17□□□□□ -0.14
Trim56Q80VI1 Gm44136-201ENSMUST00000203819 1106 ntBASIC14.17□□□□□ -0.14
Trim56Q80VI1 Gm7848-201ENSMUST00000210739 718 ntBASIC14.17□□□□□ -0.14
Trim56Q80VI1 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC14.17□□□□□ -0.14
Trim56Q80VI1 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim56Q80VI1 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim56Q80VI1 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim56Q80VI1 Dgcr2-203ENSMUST00000117082 2987 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trim56Q80VI1 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim56Q80VI1 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim56Q80VI1 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim56Q80VI1 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trim56Q80VI1 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Trim56Q80VI1 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trim56Q80VI1 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim56Q80VI1 Olfr667-202ENSMUST00000217177 2695 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Trim56Q80VI1 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim56Q80VI1 Gm45428-201ENSMUST00000209619 1789 ntBASIC14.17□□□□□ -0.14
Trim56Q80VI1 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Prr3-203ENSMUST00000172429 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Nudt18-202ENSMUST00000228554 3619 ntBASIC14.16□□□□□ -0.14
Trim56Q80VI1 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Gm12857-201ENSMUST00000117678 592 ntBASIC14.16□□□□□ -0.14
Trim56Q80VI1 Gm14441-201ENSMUST00000121960 540 ntBASIC14.16□□□□□ -0.14
Trim56Q80VI1 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Gm11434-201ENSMUST00000122379 629 ntBASIC14.16□□□□□ -0.14
Trim56Q80VI1 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Spata3-210ENSMUST00000153247 884 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Gm16570-201ENSMUST00000161951 436 ntBASIC14.16□□□□□ -0.14
Trim56Q80VI1 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Gm18734-201ENSMUST00000172937 808 ntBASIC14.16□□□□□ -0.14
Trim56Q80VI1 Rn7s1-201ENSMUST00000174924 300 ntBASIC14.16□□□□□ -0.14
Trim56Q80VI1 Rn7s2-201ENSMUST00000175032 300 ntBASIC14.16□□□□□ -0.14
Trim56Q80VI1 Gm26461-201ENSMUST00000175064 290 ntBASIC14.16□□□□□ -0.14
Trim56Q80VI1 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Cyb561-206ENSMUST00000184086 1130 ntTSL 5 BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Gm28262-201ENSMUST00000185463 477 ntTSL 5 BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Chrna10-201ENSMUST00000084830 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Gdpd5-208ENSMUST00000213887 2711 ntTSL 5 BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim56Q80VI1 F730043M19Rik-204ENSMUST00000148740 3312 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Grap2-201ENSMUST00000043149 3158 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim56Q80VI1 Osbp2-201ENSMUST00000070552 4097 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.14
Trim56Q80VI1 Bpi-201ENSMUST00000065039 1926 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim56Q80VI1 AC159308.2-201ENSMUST00000213592 2325 ntBASIC14.15□□□□□ -0.14
Trim56Q80VI1 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim56Q80VI1 Rcor3-201ENSMUST00000073279 3748 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim56Q80VI1 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim56Q80VI1 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim56Q80VI1 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC14.15□□□□□ -0.14
Trim56Q80VI1 Ccdc114-201ENSMUST00000038720 2460 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim56Q80VI1 Zfp125-201ENSMUST00000079237 2488 ntBASIC14.15□□□□□ -0.14
Trim56Q80VI1 Lck-201ENSMUST00000067240 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim56Q80VI1 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim56Q80VI1 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms