Protein–RNA interactions for Protein: Q61371

Ift88, Intraflagellar transport protein 88 homolog, mousemouse

Predictions only

Length 824 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ift88Q61371 Zeb2-211ENSMUST00000153561 2070 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Ift88Q61371 Mrvi1-202ENSMUST00000125758 5953 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
Ift88Q61371 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Ift88Q61371 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ift88Q61371 Odf2l-201ENSMUST00000029920 2239 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Ift88Q61371 Gm4316-201ENSMUST00000212411 2617 ntTSL 5 BASIC13.29□□□□□ -0.28
Ift88Q61371 Leprot-201ENSMUST00000030254 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ift88Q61371 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Ift88Q61371 Cdc37-201ENSMUST00000019615 7851 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ift88Q61371 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ift88Q61371 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ift88Q61371 Ripor1-201ENSMUST00000043531 4108 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ift88Q61371 Mmd2-201ENSMUST00000037048 3317 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ift88Q61371 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
Ift88Q61371 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Ift88Q61371 Gm12201-201ENSMUST00000120657 1234 ntBASIC13.29□□□□□ -0.28
Ift88Q61371 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Ift88Q61371 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Ift88Q61371 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Ift88Q61371 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ift88Q61371 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Ift88Q61371 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
Ift88Q61371 Gm5706-201ENSMUST00000181525 993 ntBASIC13.29□□□□□ -0.28
Ift88Q61371 Gm8602-201ENSMUST00000184045 607 ntBASIC13.29□□□□□ -0.28
Ift88Q61371 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Ift88Q61371 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Ift88Q61371 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC13.29□□□□□ -0.28
Ift88Q61371 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC13.29□□□□□ -0.28
Ift88Q61371 Arhgef33-209ENSMUST00000225223 714 ntBASIC13.29□□□□□ -0.28
Ift88Q61371 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ift88Q61371 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ift88Q61371 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ift88Q61371 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ift88Q61371 Nom1-201ENSMUST00000001611 9219 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ift88Q61371 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ift88Q61371 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC13.29□□□□□ -0.28
Ift88Q61371 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ift88Q61371 Fcer2a-201ENSMUST00000005678 2242 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ift88Q61371 Klhl3-202ENSMUST00000160860 7149 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Ift88Q61371 Ambra1-203ENSMUST00000099712 5021 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ift88Q61371 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Ift88Q61371 Rtp4-202ENSMUST00000209422 1859 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Ift88Q61371 Gpc5-203ENSMUST00000176912 2837 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Ift88Q61371 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ift88Q61371 Kndc1-201ENSMUST00000053445 7299 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Ift88Q61371 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Ift88Q61371 Grpel1-201ENSMUST00000031099 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ift88Q61371 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ift88Q61371 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ift88Q61371 Arhgap31-201ENSMUST00000023487 7964 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ift88Q61371 Gm8155-201ENSMUST00000216363 1612 ntBASIC13.28□□□□□ -0.28
Ift88Q61371 Gm43773-201ENSMUST00000198548 2162 ntBASIC13.28□□□□□ -0.28
Ift88Q61371 Tunar-201ENSMUST00000180458 3282 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ift88Q61371 Tiprl-201ENSMUST00000043235 4380 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ift88Q61371 Nras-201ENSMUST00000029445 4470 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ift88Q61371 Frmpd2-203ENSMUST00000208577 5192 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Ift88Q61371 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ift88Q61371 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ift88Q61371 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ift88Q61371 Sema4c-208ENSMUST00000195620 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ift88Q61371 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Ift88Q61371 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ift88Q61371 AC126253.1-201ENSMUST00000227974 824 ntBASIC13.28□□□□□ -0.28
Ift88Q61371 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ift88Q61371 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ift88Q61371 Gm2128-201ENSMUST00000108009 2560 ntBASIC13.28□□□□□ -0.28
Ift88Q61371 Ces2a-201ENSMUST00000034346 1960 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ift88Q61371 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ift88Q61371 Gm4366-201ENSMUST00000201488 1342 ntBASIC13.28□□□□□ -0.28
Ift88Q61371 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ift88Q61371 Ube2v1-202ENSMUST00000109207 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ift88Q61371 Aldh1a7-201ENSMUST00000025656 2066 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ift88Q61371 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ift88Q61371 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ift88Q61371 Dock6-201ENSMUST00000034728 6467 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Ift88Q61371 Ptprr-204ENSMUST00000128399 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ift88Q61371 Pygo2-202ENSMUST00000107413 2911 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ift88Q61371 Gm26872-201ENSMUST00000180862 2261 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ift88Q61371 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ift88Q61371 Rfx6-204ENSMUST00000219364 2682 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Ift88Q61371 4931428F04Rik-202ENSMUST00000171788 3552 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
Ift88Q61371 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Ift88Q61371 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ift88Q61371 Pbrm1-207ENSMUST00000112095 7907 ntTSL 5 BASIC13.27□□□□□ -0.28
Ift88Q61371 Fga-201ENSMUST00000029630 2083 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Ift88Q61371 Wdr4-207ENSMUST00000171171 4153 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ift88Q61371 Gm9796-201ENSMUST00000062249 2250 ntBASIC13.27□□□□□ -0.28
Ift88Q61371 Nrde2-201ENSMUST00000021596 3718 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Ift88Q61371 Gm14660-201ENSMUST00000119809 575 ntBASIC13.27□□□□□ -0.29
Ift88Q61371 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC13.27□□□□□ -0.29
Ift88Q61371 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
Ift88Q61371 Gm25043-201ENSMUST00000158604 212 ntBASIC13.27□□□□□ -0.29
Ift88Q61371 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC13.27□□□□□ -0.29
Ift88Q61371 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ift88Q61371 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC13.27□□□□□ -0.29
Ift88Q61371 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC13.27□□□□□ -0.29
Ift88Q61371 Gm2546-201ENSMUST00000182630 991 ntBASIC13.27□□□□□ -0.29
Ift88Q61371 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC13.27□□□□□ -0.29
Ift88Q61371 Gm8565-201ENSMUST00000183259 1014 ntBASIC13.27□□□□□ -0.29
Ift88Q61371 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 49.8 ms