Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Selenot-201ENSMUST00000107924 3157 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Bpi-201ENSMUST00000065039 1926 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm15784-201ENSMUST00000120260 1462 ntBASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm22920-201ENSMUST00000102175 109 ntBASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm15172-201ENSMUST00000118945 1046 ntBASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm15207-201ENSMUST00000119259 442 ntBASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 4930562C15Rik-202ENSMUST00000171105 1299 ntTSL 2 BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Dpf3-206ENSMUST00000177959 1298 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm17798-201ENSMUST00000182282 1035 ntBASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Mir6923-201ENSMUST00000184592 72 ntBASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm29410-201ENSMUST00000188383 694 ntBASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm37229-201ENSMUST00000191643 732 ntTSL 3 BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm18463-201ENSMUST00000207258 474 ntBASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm6722-201ENSMUST00000221586 390 ntBASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 AC166344.1-201ENSMUST00000223745 674 ntBASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 AC124433.1-201ENSMUST00000224483 1063 ntBASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm10334-201ENSMUST00000095999 876 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Cpsf7-201ENSMUST00000038379 3604 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Cnot7-211ENSMUST00000149992 2982 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc88aQ5SNZ0 Aurkc-203ENSMUST00000207711 1320 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm5434-202ENSMUST00000222384 1451 ntBASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm5434-201ENSMUST00000071825 1451 ntBASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 2610301B20Rik-202ENSMUST00000101504 2053 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm22711-201ENSMUST00000116890 133 ntBASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 4930502E09Rik-201ENSMUST00000126016 755 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm14236-201ENSMUST00000142374 872 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm4310-201ENSMUST00000177847 889 ntBASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm19091-201ENSMUST00000208120 978 ntBASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 6430531B16Rik-204ENSMUST00000209335 898 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm31166-202ENSMUST00000210638 1268 ntTSL 3 BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 1700013F07Rik-201ENSMUST00000029485 661 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Amtn-201ENSMUST00000073363 1022 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm4744-201ENSMUST00000073642 792 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Rasgrp4-214ENSMUST00000205027 2717 ntTSL 5 BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc88aQ5SNZ0 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC13.72□□□□□ -0.21
Ccdc88aQ5SNZ0 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm3551-201ENSMUST00000190750 664 ntBASIC13.72□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm35549-201ENSMUST00000203176 735 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Ccdc88aQ5SNZ0 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ccdc88aQ5SNZ0 Anxa4-202ENSMUST00000113675 2030 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ccdc88aQ5SNZ0 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Ccdc88aQ5SNZ0 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ccdc88aQ5SNZ0 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ccdc88aQ5SNZ0 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ccdc88aQ5SNZ0 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ccdc88aQ5SNZ0 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ccdc88aQ5SNZ0 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Ccdc88aQ5SNZ0 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Ccdc88aQ5SNZ0 Iqcc-201ENSMUST00000046675 2639 ntAPPRIS P2 TSL 2 BASIC13.72□□□□□ -0.21
Ccdc88aQ5SNZ0 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Ccdc88aQ5SNZ0 Mccc1os-202ENSMUST00000137198 2686 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Ccdc88aQ5SNZ0 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Ccdc88aQ5SNZ0 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ccdc88aQ5SNZ0 Hrct1-201ENSMUST00000095109 1452 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
Ccdc88aQ5SNZ0 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 57.2 ms