Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Ralgps2-211ENSMUST00000190648 2498 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 AC156031.2-201ENSMUST00000213107 3310 ntBASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Gabpb1-204ENSMUST00000103227 2751 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Crry-ps-201ENSMUST00000079090 1309 ntBASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Armt1-203ENSMUST00000118544 5044 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Capn3-205ENSMUST00000110719 2778 ntTSL 5 BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Zfp810-201ENSMUST00000086278 3238 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Gm13996-201ENSMUST00000118456 430 ntBASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Gm5706-201ENSMUST00000181525 993 ntBASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Gm9257-201ENSMUST00000221254 232 ntBASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 AC123619.2-202ENSMUST00000225097 1568 ntBASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Ibsp-201ENSMUST00000031246 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Arhgap20-204ENSMUST00000130405 3881 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Aldoc-202ENSMUST00000102478 1700 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Hltf-201ENSMUST00000002502 4955 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Gpr45-201ENSMUST00000114761 1546 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 Gm9195-201ENSMUST00000208955 8870 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Upf3bQ3ULL6 AC154517.2-201ENSMUST00000220829 2458 ntBASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Gm5419-201ENSMUST00000119301 527 ntBASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Cmtm1-201ENSMUST00000159039 1130 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Atp10d-206ENSMUST00000169617 761 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Gm38241-201ENSMUST00000192641 898 ntBASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Gm44262-201ENSMUST00000204969 372 ntBASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 AC153929.1-201ENSMUST00000219009 303 ntBASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 AC159205.5-202ENSMUST00000224849 386 ntBASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 CT009713.10-202ENSMUST00000225734 696 ntBASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Ms4a8a-201ENSMUST00000025636 1081 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Gm5455-201ENSMUST00000058710 715 ntBASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Map1b-203ENSMUST00000223725 2669 ntBASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Carmil1-201ENSMUST00000072889 4988 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Upf3bQ3ULL6 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 47.7 ms