Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Gm40879-201ENSMUST00000220759 612 ntBASIC12.46□□□□□ -0.41
Sox9Q04887 Rad51c-201ENSMUST00000007790 1632 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Sox9Q04887 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC12.46□□□□□ -0.42
Sox9Q04887 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC12.46□□□□□ -0.42
Sox9Q04887 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Sox9Q04887 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Sox9Q04887 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Sox9Q04887 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Sox9Q04887 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Sox9Q04887 Etv1-205ENSMUST00000160856 1474 ntTSL 5 BASIC12.46□□□□□ -0.42
Sox9Q04887 Gm5641-201ENSMUST00000091130 1488 ntBASIC12.46□□□□□ -0.42
Sox9Q04887 Gm5380-201ENSMUST00000119296 2136 ntBASIC12.46□□□□□ -0.42
Sox9Q04887 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Sox9Q04887 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC12.46□□□□□ -0.42
Sox9Q04887 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Sox9Q04887 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sox9Q04887 Otx2-202ENSMUST00000119070 1708 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Sox9Q04887 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sox9Q04887 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sox9Q04887 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
Sox9Q04887 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sox9Q04887 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Sox9Q04887 Gm44891-201ENSMUST00000208817 2223 ntBASIC12.45□□□□□ -0.42
Sox9Q04887 Cyb5rl-202ENSMUST00000106756 1604 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Sox9Q04887 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Sox9Q04887 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
Sox9Q04887 Ralyl-202ENSMUST00000108373 267 ntTSL 5 BASIC12.45□□□□□ -0.42
Sox9Q04887 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC12.45□□□□□ -0.42
Sox9Q04887 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
Sox9Q04887 Gm10169-201ENSMUST00000121822 348 ntBASIC12.45□□□□□ -0.42
Sox9Q04887 Gm13166-201ENSMUST00000123828 940 ntTSL 5 BASIC12.45□□□□□ -0.42
Sox9Q04887 Apobr-203ENSMUST00000137646 457 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
Sox9Q04887 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sox9Q04887 Fyn-207ENSMUST00000146287 2135 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Sox9Q04887 Gm13236-201ENSMUST00000153010 940 ntTSL 5 BASIC12.45□□□□□ -0.42
Sox9Q04887 Ccl19-ps3-201ENSMUST00000179634 324 ntBASIC12.45□□□□□ -0.42
Sox9Q04887 Csmd2os-202ENSMUST00000179945 643 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Sox9Q04887 Gm12407-201ENSMUST00000180219 324 ntBASIC12.45□□□□□ -0.42
Sox9Q04887 Gm9916-201ENSMUST00000192943 1228 ntBASIC12.45□□□□□ -0.42
Sox9Q04887 Gm42863-201ENSMUST00000197875 2958 ntBASIC12.45□□□□□ -0.42
Sox9Q04887 Gm18711-201ENSMUST00000199341 750 ntBASIC12.45□□□□□ -0.42
Sox9Q04887 4930543N07Rik-202ENSMUST00000209503 1117 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Sox9Q04887 Gm13539-202ENSMUST00000211245 552 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Sox9Q04887 Gm30978-201ENSMUST00000211581 1066 ntTSL 5 BASIC12.45□□□□□ -0.42
Sox9Q04887 4930423D24Rik-202ENSMUST00000219785 554 ntTSL 5 BASIC12.45□□□□□ -0.42
Sox9Q04887 Pcgf5-204ENSMUST00000224772 1266 ntAPPRIS ALT1 BASIC12.45□□□□□ -0.42
Sox9Q04887 Hils1-201ENSMUST00000038928 864 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
Sox9Q04887 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Sox9Q04887 Gpr153-201ENSMUST00000055754 3757 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sox9Q04887 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sox9Q04887 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Sox9Q04887 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC12.45□□□□□ -0.42
Sox9Q04887 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sox9Q04887 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sox9Q04887 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Sox9Q04887 A530032D15Rik-201ENSMUST00000160792 1492 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sox9Q04887 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Sox9Q04887 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
Sox9Q04887 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC12.45□□□□□ -0.42
Sox9Q04887 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sox9Q04887 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sox9Q04887 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Sox9Q04887 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sox9Q04887 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sox9Q04887 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sox9Q04887 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
Sox9Q04887 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC12.44□□□□□ -0.42
Sox9Q04887 Gm44414-201ENSMUST00000203660 2109 ntBASIC12.44□□□□□ -0.42
Sox9Q04887 Gm27196-201ENSMUST00000184787 2582 ntBASIC12.44□□□□□ -0.42
Sox9Q04887 Lyplal1-201ENSMUST00000045388 1578 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sox9Q04887 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sox9Q04887 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sox9Q04887 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sox9Q04887 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sox9Q04887 Hddc3-201ENSMUST00000032747 1510 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sox9Q04887 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sox9Q04887 Opn1mw-202ENSMUST00000101457 1233 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sox9Q04887 Art5-202ENSMUST00000106934 843 ntTSL 5 BASIC12.44□□□□□ -0.42
Sox9Q04887 Crygc-202ENSMUST00000114064 612 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sox9Q04887 Gm13117-201ENSMUST00000120894 691 ntBASIC12.44□□□□□ -0.42
Sox9Q04887 Utp23-202ENSMUST00000136129 779 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Sox9Q04887 Gm22846-201ENSMUST00000157706 270 ntBASIC12.44□□□□□ -0.42
Sox9Q04887 Fcgr2b-203ENSMUST00000159688 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sox9Q04887 E030018B13Rik-201ENSMUST00000177638 1015 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sox9Q04887 Clec7a-202ENSMUST00000184581 707 ntAPPRIS P2 TSL 3 BASIC12.44□□□□□ -0.42
Sox9Q04887 Gm42511-201ENSMUST00000196160 234 ntBASIC12.44□□□□□ -0.42
Sox9Q04887 Gm3433-201ENSMUST00000210149 1058 ntBASIC12.44□□□□□ -0.42
Sox9Q04887 AC113082.1-201ENSMUST00000217324 327 ntBASIC12.44□□□□□ -0.42
Sox9Q04887 AC154826.1-201ENSMUST00000217369 498 ntTSL 5 BASIC12.44□□□□□ -0.42
Sox9Q04887 Stt3a-209ENSMUST00000217599 285 ntTSL 5 BASIC12.44□□□□□ -0.42
Sox9Q04887 BC106175-202ENSMUST00000219344 1213 ntBASIC12.44□□□□□ -0.42
Sox9Q04887 AC113282.2-201ENSMUST00000224012 945 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Sox9Q04887 AC113282.3-201ENSMUST00000224757 942 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Sox9Q04887 Gm5513-201ENSMUST00000072982 1218 ntBASIC12.44□□□□□ -0.42
Sox9Q04887 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Sox9Q04887 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC12.44□□□□□ -0.42
Sox9Q04887 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sox9Q04887 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Sox9Q04887 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sox9Q04887 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms