Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Gm11509-201ENSMUST00000117358 325 ntBASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Mir7677-201ENSMUST00000184226 67 ntBASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Mir6927-201ENSMUST00000184494 71 ntBASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Gm42629-201ENSMUST00000199063 1102 ntBASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 AC121960.1-201ENSMUST00000227982 564 ntBASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Zic4-204ENSMUST00000172646 2535 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Vit-201ENSMUST00000024880 2720 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Lynx1-201ENSMUST00000023259 4023 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cpsf3Q9QXK7 Nol4l-202ENSMUST00000109784 5610 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Wdr18-201ENSMUST00000045247 3911 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Adamts5-201ENSMUST00000023611 8091 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Plcg1-202ENSMUST00000103115 4435 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Myf5-201ENSMUST00000000445 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 AC129931.1-201ENSMUST00000228865 1861 ntBASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Mir7070-201ENSMUST00000183657 86 ntBASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Gm43184-201ENSMUST00000197247 542 ntBASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 AU022133-201ENSMUST00000200601 873 ntBASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Gm5705-201ENSMUST00000066241 711 ntBASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Gm26448-201ENSMUST00000082446 203 ntBASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Zfp810-201ENSMUST00000086278 3238 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Zrsr2-201ENSMUST00000090840 3867 ntTSL 2 BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Gm37348-201ENSMUST00000193104 1789 ntBASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Gm8522-201ENSMUST00000118416 1929 ntBASIC12.94□□□□□ -0.34
Cpsf3Q9QXK7 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cpsf3Q9QXK7 Gm9796-201ENSMUST00000062249 2250 ntBASIC12.93□□□□□ -0.34
Cpsf3Q9QXK7 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cpsf3Q9QXK7 Triobp-203ENSMUST00000109689 7187 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cpsf3Q9QXK7 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cpsf3Q9QXK7 AC173482.6-201ENSMUST00000225889 1741 ntBASIC12.93□□□□□ -0.34
Cpsf3Q9QXK7 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cpsf3Q9QXK7 Fzd4-201ENSMUST00000058755 6720 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cpsf3Q9QXK7 Anxa8-201ENSMUST00000022519 1880 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cpsf3Q9QXK7 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Cpsf3Q9QXK7 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cpsf3Q9QXK7 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cpsf3Q9QXK7 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Cpsf3Q9QXK7 Olfr222-203ENSMUST00000215339 2166 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Cpsf3Q9QXK7 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Cpsf3Q9QXK7 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 69.2 ms