Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Sema3g-201ENSMUST00000090180 4540 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Arhgap29-201ENSMUST00000037958 5787 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Arl8b-201ENSMUST00000032196 4443 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Bnip3l-ps-201ENSMUST00000101577 657 ntBASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Gm13996-201ENSMUST00000118456 430 ntBASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Gm13461-201ENSMUST00000120980 662 ntBASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Gm14235-201ENSMUST00000142445 366 ntTSL 3 BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Ighv1-60-201ENSMUST00000195816 405 ntBASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Bnip3l-ps-202ENSMUST00000220709 1132 ntBASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Mecom-202ENSMUST00000108270 5692 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Pcdhga6-201ENSMUST00000195823 4733 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Vps53Q8CCB4 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Phldb2-201ENSMUST00000036355 5483 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Gm44260-201ENSMUST00000204946 2094 ntBASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Grm1-201ENSMUST00000044306 6930 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Pex5-205ENSMUST00000112532 3148 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Als2cl-206ENSMUST00000155014 5150 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Gm13315-201ENSMUST00000120376 991 ntBASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Gm13587-201ENSMUST00000152645 366 ntTSL 5 BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Myo18a-224ENSMUST00000172303 6339 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 CU062626.3-201ENSMUST00000225522 1411 ntBASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Atxn7l1os2-201ENSMUST00000138617 2019 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Gm4864-201ENSMUST00000219894 1461 ntBASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Gm5884-201ENSMUST00000036712 1479 ntBASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 AC122840.1-201ENSMUST00000220915 3334 ntBASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Vps53Q8CCB4 Gm2673-201ENSMUST00000120958 1608 ntBASIC14.04□□□□□ -0.16
Vps53Q8CCB4 Ttc17-203ENSMUST00000111237 4409 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Vps53Q8CCB4 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Vps53Q8CCB4 Cad-211ENSMUST00000202795 6559 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Vps53Q8CCB4 Gm9951-202ENSMUST00000149618 1772 ntTSL 2 BASIC14.04□□□□□ -0.16
Vps53Q8CCB4 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Vps53Q8CCB4 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Vps53Q8CCB4 Slc6a5-201ENSMUST00000056442 7065 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Vps53Q8CCB4 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Vps53Q8CCB4 Gm26883-201ENSMUST00000180945 4878 ntTSL 5 BASIC14.04□□□□□ -0.16
Vps53Q8CCB4 Slc39a14-202ENSMUST00000068044 4926 ntAPPRIS P3 TSL 5 BASIC14.04□□□□□ -0.16
Vps53Q8CCB4 Stk32b-201ENSMUST00000094836 3458 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 44.5 ms