Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Pros1-201ENSMUST00000023629 3303 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Gm1995-201ENSMUST00000220838 2602 ntBASIC14.2□□□□□ -0.14
Trim56Q80VI1 Orc5-201ENSMUST00000030872 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim56Q80VI1 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Rpl35a-204ENSMUST00000115078 500 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Gm12266-201ENSMUST00000120311 962 ntBASIC14.2□□□□□ -0.14
Trim56Q80VI1 Cd63-ps-202ENSMUST00000154992 717 ntBASIC14.2□□□□□ -0.14
Trim56Q80VI1 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Mir5120-201ENSMUST00000175020 78 ntBASIC14.2□□□□□ -0.14
Trim56Q80VI1 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Gm807-202ENSMUST00000224929 408 ntBASIC14.2□□□□□ -0.14
Trim56Q80VI1 AC133602.1-201ENSMUST00000227510 509 ntBASIC14.2□□□□□ -0.14
Trim56Q80VI1 Wasf2-202ENSMUST00000105912 2236 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim56Q80VI1 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Mccc1os-202ENSMUST00000137198 2686 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Mmel1-207ENSMUST00000163732 2935 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim56Q80VI1 AC093022.4-203ENSMUST00000228523 2657 ntBASIC14.19□□□□□ -0.14
Trim56Q80VI1 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trim56Q80VI1 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC14.19□□□□□ -0.14
Trim56Q80VI1 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim56Q80VI1 Gm2238-201ENSMUST00000192074 3669 ntBASIC14.19□□□□□ -0.14
Trim56Q80VI1 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim56Q80VI1 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC14.19□□□□□ -0.14
Trim56Q80VI1 Ighg2c-201ENSMUST00000103416 1214 ntAPPRIS P5 BASIC14.19□□□□□ -0.14
Trim56Q80VI1 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC14.19□□□□□ -0.14
Trim56Q80VI1 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trim56Q80VI1 H2-Q3-201ENSMUST00000172583 608 ntBASIC14.19□□□□□ -0.14
Trim56Q80VI1 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trim56Q80VI1 Gm18827-201ENSMUST00000188341 790 ntBASIC14.19□□□□□ -0.14
Trim56Q80VI1 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC14.19□□□□□ -0.14
Trim56Q80VI1 Gm5369-201ENSMUST00000217499 588 ntBASIC14.19□□□□□ -0.14
Trim56Q80VI1 Qrsl1-201ENSMUST00000020012 1981 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim56Q80VI1 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC14.19□□□□□ -0.14
Trim56Q80VI1 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim56Q80VI1 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim56Q80VI1 Arsg-202ENSMUST00000106696 1508 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trim56Q80VI1 Kalrn-211ENSMUST00000114966 3857 ntTSL 5 BASIC14.19□□□□□ -0.14
Trim56Q80VI1 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim56Q80VI1 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Trim56Q80VI1 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC14.19□□□□□ -0.14
Trim56Q80VI1 Fancc-214ENSMUST00000161977 3111 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim56Q80VI1 Nfe2l1-210ENSMUST00000167110 3547 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
Trim56Q80VI1 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim56Q80VI1 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC14.19□□□□□ -0.14
Trim56Q80VI1 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Trim56Q80VI1 Smim1-208ENSMUST00000143047 3373 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim56Q80VI1 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Trim56Q80VI1 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
Trim56Q80VI1 Nicn1-201ENSMUST00000035227 2133 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim56Q80VI1 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim56Q80VI1 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim56Q80VI1 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim56Q80VI1 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim56Q80VI1 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim56Q80VI1 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim56Q80VI1 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim56Q80VI1 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim56Q80VI1 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim56Q80VI1 AC157950.1-201ENSMUST00000217561 2168 ntBASIC14.18□□□□□ -0.14
Trim56Q80VI1 5930412G12Rik-201ENSMUST00000091324 2403 ntTSL 5 BASIC14.18□□□□□ -0.14
Trim56Q80VI1 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC14.18□□□□□ -0.14
Trim56Q80VI1 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim56Q80VI1 Styxl1-205ENSMUST00000111164 1243 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim56Q80VI1 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC14.18□□□□□ -0.14
Trim56Q80VI1 Gm25881-201ENSMUST00000157783 103 ntBASIC14.18□□□□□ -0.14
Trim56Q80VI1 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim56Q80VI1 Gm28686-201ENSMUST00000187404 609 ntBASIC14.18□□□□□ -0.14
Trim56Q80VI1 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC14.18□□□□□ -0.14
Trim56Q80VI1 4930479H17Rik-201ENSMUST00000208824 292 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim56Q80VI1 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC14.18□□□□□ -0.14
Trim56Q80VI1 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC14.18□□□□□ -0.14
Trim56Q80VI1 C1qb-201ENSMUST00000046384 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim56Q80VI1 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim56Q80VI1 Grm7-202ENSMUST00000172951 4197 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim56Q80VI1 Gm45743-201ENSMUST00000212701 2795 ntBASIC14.18□□□□□ -0.14
Trim56Q80VI1 Cc2d1a-202ENSMUST00000117424 3262 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Trim56Q80VI1 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim56Q80VI1 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 74.2 ms