Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ubfd1Q78JW9 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ubfd1Q78JW9 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ubfd1Q78JW9 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ubfd1Q78JW9 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Ubfd1Q78JW9 Gm16364-201ENSMUST00000153722 1313 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Ubfd1Q78JW9 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Ubfd1Q78JW9 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Ubfd1Q78JW9 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ubfd1Q78JW9 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ubfd1Q78JW9 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Ubfd1Q78JW9 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ubfd1Q78JW9 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ubfd1Q78JW9 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Ubfd1Q78JW9 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Ubfd1Q78JW9 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ubfd1Q78JW9 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ubfd1Q78JW9 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Atp1a2-201ENSMUST00000085913 6227 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Mir680-2-201ENSMUST00000102163 110 ntBASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Gm23251-201ENSMUST00000103773 110 ntBASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Gm6506-201ENSMUST00000119775 1136 ntBASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Gm23699-201ENSMUST00000158835 135 ntBASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Crnde-207ENSMUST00000180102 732 ntTSL 3 BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Gm28686-201ENSMUST00000187404 609 ntBASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Rbakdn-201ENSMUST00000198334 520 ntTSL 2 BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Gm43947-201ENSMUST00000203019 959 ntBASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Gm44100-201ENSMUST00000204329 436 ntBASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Gm21057-202ENSMUST00000206111 512 ntTSL 2 BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Gm45418-202ENSMUST00000210693 649 ntTSL 5 BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Gm2553-201ENSMUST00000215986 605 ntBASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 AC151275.1-201ENSMUST00000224870 585 ntBASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 CT009713.8-201ENSMUST00000225448 560 ntBASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Gm1821-202ENSMUST00000227415 750 ntBASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 1700128F08Rik-201ENSMUST00000034483 1110 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Il17c-201ENSMUST00000050963 719 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Mir219a-1-201ENSMUST00000083621 110 ntBASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Lrp8-206ENSMUST00000126573 2590 ntTSL 5 BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Ubfd1Q78JW9 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Ubfd1Q78JW9 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC11.74□□□□□ -0.53
Ubfd1Q78JW9 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Ubfd1Q78JW9 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Ubfd1Q78JW9 Fuk-201ENSMUST00000041382 3838 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Ubfd1Q78JW9 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Ubfd1Q78JW9 Dnajc16-201ENSMUST00000038014 5969 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Ubfd1Q78JW9 Gm6189-201ENSMUST00000164487 2082 ntBASIC11.74□□□□□ -0.53
Ubfd1Q78JW9 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Ubfd1Q78JW9 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Ubfd1Q78JW9 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Ubfd1Q78JW9 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Ubfd1Q78JW9 Brdt-201ENSMUST00000031215 4745 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Ubfd1Q78JW9 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
Ubfd1Q78JW9 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC11.74□□□□□ -0.53
Ubfd1Q78JW9 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC11.74□□□□□ -0.53
Ubfd1Q78JW9 Gm13045-201ENSMUST00000119019 712 ntBASIC11.74□□□□□ -0.53
Ubfd1Q78JW9 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Ubfd1Q78JW9 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Ubfd1Q78JW9 Rhox5-201ENSMUST00000179626 633 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Ubfd1Q78JW9 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Ubfd1Q78JW9 Gm42682-201ENSMUST00000198349 1265 ntBASIC11.74□□□□□ -0.53
Ubfd1Q78JW9 Gm19287-201ENSMUST00000203190 358 ntBASIC11.74□□□□□ -0.53
Ubfd1Q78JW9 Gm45484-201ENSMUST00000210310 1141 ntBASIC11.74□□□□□ -0.53
Ubfd1Q78JW9 Gm45765-201ENSMUST00000212027 1035 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Ubfd1Q78JW9 1700027J07Rik-202ENSMUST00000215747 1060 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Ubfd1Q78JW9 1700001J03Rik-201ENSMUST00000073721 787 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Ubfd1Q78JW9 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 63.3 ms