Protein–RNA interactions for Protein: Q62205

Scn9a, Sodium channel protein type 9 subunit alpha, mousemouse

Predictions only

Length 1,984 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn9aQ62205 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Scn9aQ62205 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Scn9aQ62205 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Scn9aQ62205 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Scn9aQ62205 Gm26826-201ENSMUST00000181317 1395 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Scn9aQ62205 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Scn9aQ62205 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Scn9aQ62205 Platr19-201ENSMUST00000171380 1466 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Scn9aQ62205 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Scn9aQ62205 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Scn9aQ62205 Slc1a2-203ENSMUST00000111212 1957 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Scn9aQ62205 Slc40a1-201ENSMUST00000027137 3370 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Scn9aQ62205 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Scn9aQ62205 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Scn9aQ62205 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Scn9aQ62205 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Scn9aQ62205 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Scn9aQ62205 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Scn9aQ62205 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC13.93□□□□□ -0.18
Scn9aQ62205 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Scn9aQ62205 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC13.93□□□□□ -0.18
Scn9aQ62205 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Scn9aQ62205 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Scn9aQ62205 Zdhhc21-202ENSMUST00000107239 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Scn9aQ62205 Gm12036-201ENSMUST00000120008 530 ntBASIC13.92□□□□□ -0.18
Scn9aQ62205 Anxa8-202ENSMUST00000120077 1208 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Scn9aQ62205 9430093N23Rik-201ENSMUST00000152494 515 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Scn9aQ62205 Gm23675-201ENSMUST00000157311 125 ntBASIC13.92□□□□□ -0.18
Scn9aQ62205 Ins2-208ENSMUST00000162317 297 ntTSL 5 BASIC13.92□□□□□ -0.18
Scn9aQ62205 Gm21778-201ENSMUST00000178779 471 ntBASIC13.92□□□□□ -0.18
Scn9aQ62205 CT030652.1-201ENSMUST00000227377 1235 ntBASIC13.92□□□□□ -0.18
Scn9aQ62205 Ino80c-204ENSMUST00000153360 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Scn9aQ62205 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC13.92□□□□□ -0.18
Scn9aQ62205 Gm6170-201ENSMUST00000187672 1388 ntBASIC13.92□□□□□ -0.18
Scn9aQ62205 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC13.92□□□□□ -0.18
Scn9aQ62205 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Scn9aQ62205 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Scn9aQ62205 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Scn9aQ62205 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Scn9aQ62205 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Scn9aQ62205 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Scn9aQ62205 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Scn9aQ62205 Rpl22-204ENSMUST00000139685 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Scn9aQ62205 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
Scn9aQ62205 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Scn9aQ62205 Clps-202ENSMUST00000114785 369 ntTSL 2 BASIC13.92□□□□□ -0.18
Scn9aQ62205 Cd55b-202ENSMUST00000119432 986 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Scn9aQ62205 Gm9166-201ENSMUST00000120293 561 ntBASIC13.92□□□□□ -0.18
Scn9aQ62205 Slfn5os-201ENSMUST00000127074 574 ntTSL 2 BASIC13.92□□□□□ -0.18
Scn9aQ62205 Gm16030-201ENSMUST00000159098 603 ntBASIC13.92□□□□□ -0.18
Scn9aQ62205 Dydc1-202ENSMUST00000161837 829 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Scn9aQ62205 Ccndbp1-208ENSMUST00000171260 1187 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Scn9aQ62205 Gm26555-201ENSMUST00000180452 1037 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Scn9aQ62205 Gm9081-201ENSMUST00000182346 991 ntBASIC13.92□□□□□ -0.18
Scn9aQ62205 Gm26976-201ENSMUST00000182929 908 ntBASIC13.92□□□□□ -0.18
Scn9aQ62205 Gm45135-201ENSMUST00000206787 1184 ntBASIC13.92□□□□□ -0.18
Scn9aQ62205 Park2-210ENSMUST00000218435 865 ntTSL 5 BASIC13.92□□□□□ -0.18
Scn9aQ62205 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC13.92□□□□□ -0.18
Scn9aQ62205 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Scn9aQ62205 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC13.92□□□□□ -0.18
Scn9aQ62205 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Scn9aQ62205 Gm26632-201ENSMUST00000181120 1400 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Scn9aQ62205 Gm18642-201ENSMUST00000206642 1400 ntBASIC13.91□□□□□ -0.18
Scn9aQ62205 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Scn9aQ62205 Gm10750-201ENSMUST00000099266 1506 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Scn9aQ62205 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Scn9aQ62205 Ung-203ENSMUST00000112275 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Scn9aQ62205 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Scn9aQ62205 Specc1-212ENSMUST00000202178 2932 ntTSL 5 BASIC13.91□□□□□ -0.18
Scn9aQ62205 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Scn9aQ62205 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Scn9aQ62205 Oprl1-204ENSMUST00000108767 1248 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Scn9aQ62205 Nudt12os-201ENSMUST00000145848 939 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Scn9aQ62205 C230057A21Rik-202ENSMUST00000195781 600 ntTSL 3 BASIC13.91□□□□□ -0.18
Scn9aQ62205 Gm45469-201ENSMUST00000210468 854 ntTSL 3 BASIC13.91□□□□□ -0.18
Scn9aQ62205 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Scn9aQ62205 Uqcc3-201ENSMUST00000096253 829 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Scn9aQ62205 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Scn9aQ62205 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
Scn9aQ62205 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC13.91□□□□□ -0.18
Scn9aQ62205 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Scn9aQ62205 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Scn9aQ62205 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC13.91□□□□□ -0.18
Scn9aQ62205 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Scn9aQ62205 Cast-212ENSMUST00000223309 1529 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Scn9aQ62205 Gm14820-201ENSMUST00000126286 1449 ntTSL 3 BASIC13.91□□□□□ -0.18
Scn9aQ62205 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Scn9aQ62205 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Scn9aQ62205 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Scn9aQ62205 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Scn9aQ62205 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Scn9aQ62205 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Scn9aQ62205 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Scn9aQ62205 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Scn9aQ62205 Pex3-207ENSMUST00000170376 1381 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Scn9aQ62205 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC13.91□□□□□ -0.18
Scn9aQ62205 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Scn9aQ62205 Gcg-201ENSMUST00000102733 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Scn9aQ62205 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Scn9aQ62205 Gm11960-201ENSMUST00000122068 925 ntBASIC13.91□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms