Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col6a1Q04857 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col6a1Q04857 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col6a1Q04857 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC13.35□□□□□ -0.27
Col6a1Q04857 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC13.35□□□□□ -0.27
Col6a1Q04857 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Col6a1Q04857 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col6a1Q04857 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col6a1Q04857 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col6a1Q04857 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Col6a1Q04857 Klk2-ps-202ENSMUST00000206865 2684 ntTSL 5 BASIC13.35□□□□□ -0.27
Col6a1Q04857 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col6a1Q04857 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col6a1Q04857 Gm12969-201ENSMUST00000120199 1004 ntBASIC13.35□□□□□ -0.27
Col6a1Q04857 AA387200-201ENSMUST00000147463 1177 ntTSL 3 BASIC13.35□□□□□ -0.27
Col6a1Q04857 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Col6a1Q04857 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Col6a1Q04857 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Col6a1Q04857 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC13.35□□□□□ -0.27
Col6a1Q04857 Pbld1-206ENSMUST00000219687 788 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Col6a1Q04857 AC166341.2-201ENSMUST00000220571 120 ntBASIC13.35□□□□□ -0.27
Col6a1Q04857 Scg5-201ENSMUST00000024005 1208 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col6a1Q04857 Tff2-201ENSMUST00000024826 584 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col6a1Q04857 Pgpep1l-201ENSMUST00000032770 953 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Col6a1Q04857 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col6a1Q04857 Gm9785-201ENSMUST00000062642 1006 ntBASIC13.35□□□□□ -0.27
Col6a1Q04857 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col6a1Q04857 Rab7-201ENSMUST00000095048 1275 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col6a1Q04857 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col6a1Q04857 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col6a1Q04857 Asxl1-205ENSMUST00000227428 6981 ntAPPRIS ALT2 BASIC13.35□□□□□ -0.27
Col6a1Q04857 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col6a1Q04857 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col6a1Q04857 Zfp558-202ENSMUST00000034647 1701 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Col6a1Q04857 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col6a1Q04857 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col6a1Q04857 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col6a1Q04857 Gm13142-201ENSMUST00000117213 1453 ntBASIC13.35□□□□□ -0.27
Col6a1Q04857 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC13.35□□□□□ -0.27
Col6a1Q04857 Gm28719-201ENSMUST00000187779 1757 ntBASIC13.35□□□□□ -0.27
Col6a1Q04857 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col6a1Q04857 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col6a1Q04857 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC13.35□□□□□ -0.27
Col6a1Q04857 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col6a1Q04857 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC13.34□□□□□ -0.27
Col6a1Q04857 Sept4-203ENSMUST00000107960 1653 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col6a1Q04857 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col6a1Q04857 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC13.34□□□□□ -0.27
Col6a1Q04857 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
Col6a1Q04857 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col6a1Q04857 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Col6a1Q04857 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
Col6a1Q04857 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col6a1Q04857 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col6a1Q04857 Krtap4-16-201ENSMUST00000107437 954 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
Col6a1Q04857 Gm13182-201ENSMUST00000122241 312 ntBASIC13.34□□□□□ -0.27
Col6a1Q04857 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col6a1Q04857 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
Col6a1Q04857 Gm15856-201ENSMUST00000124853 1162 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col6a1Q04857 Gm3948-201ENSMUST00000147795 421 ntTSL 3 BASIC13.34□□□□□ -0.27
Col6a1Q04857 Gm18304-201ENSMUST00000189162 546 ntBASIC13.34□□□□□ -0.27
Col6a1Q04857 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col6a1Q04857 Gm44980-201ENSMUST00000205826 314 ntBASIC13.34□□□□□ -0.27
Col6a1Q04857 Gm4157-201ENSMUST00000211647 679 ntBASIC13.34□□□□□ -0.27
Col6a1Q04857 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC13.34□□□□□ -0.27
Col6a1Q04857 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col6a1Q04857 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col6a1Q04857 Gm9962-201ENSMUST00000085241 321 ntTSL 5 BASIC13.34□□□□□ -0.27
Col6a1Q04857 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col6a1Q04857 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col6a1Q04857 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col6a1Q04857 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col6a1Q04857 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col6a1Q04857 Taok2-202ENSMUST00000117394 4985 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col6a1Q04857 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col6a1Q04857 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col6a1Q04857 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col6a1Q04857 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col6a1Q04857 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col6a1Q04857 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col6a1Q04857 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col6a1Q04857 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col6a1Q04857 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Col6a1Q04857 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Col6a1Q04857 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.27
Col6a1Q04857 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Col6a1Q04857 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Col6a1Q04857 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Col6a1Q04857 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC13.33□□□□□ -0.27
Col6a1Q04857 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Col6a1Q04857 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Col6a1Q04857 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col6a1Q04857 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Col6a1Q04857 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col6a1Q04857 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC13.33□□□□□ -0.28
Col6a1Q04857 Rmdn1-202ENSMUST00000108253 806 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col6a1Q04857 Gm11509-201ENSMUST00000117358 325 ntBASIC13.33□□□□□ -0.28
Col6a1Q04857 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Col6a1Q04857 Gm13830-203ENSMUST00000148916 247 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Col6a1Q04857 Gm28388-201ENSMUST00000186262 437 ntBASIC13.33□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms