Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Gm9630-201ENSMUST00000178304 885 ntBASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 CT009486.1-201ENSMUST00000222047 661 ntTSL 3 BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Sh3pxd2a-201ENSMUST00000081619 10464 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Lrp8-206ENSMUST00000126573 2590 ntTSL 5 BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.31
Chmp6P0C0A3 Gm5053-201ENSMUST00000208361 1678 ntBASIC13.15□□□□□ -0.31
Chmp6P0C0A3 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Chmp6P0C0A3 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chmp6P0C0A3 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chmp6P0C0A3 Dennd4c-202ENSMUST00000082026 7940 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Chmp6P0C0A3 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC13.14□□□□□ -0.31
Chmp6P0C0A3 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chmp6P0C0A3 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chmp6P0C0A3 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Chmp6P0C0A3 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chmp6P0C0A3 Nexmif-203ENSMUST00000118314 11476 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chmp6P0C0A3 Tmem41b-202ENSMUST00000118429 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chmp6P0C0A3 Lclat1-201ENSMUST00000067545 4467 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chmp6P0C0A3 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Chmp6P0C0A3 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC13.14□□□□□ -0.31
Chmp6P0C0A3 Gm15276-201ENSMUST00000145953 498 ntBASIC13.14□□□□□ -0.31
Chmp6P0C0A3 Gm23119-201ENSMUST00000158610 140 ntBASIC13.14□□□□□ -0.31
Chmp6P0C0A3 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC13.14□□□□□ -0.31
Chmp6P0C0A3 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Chmp6P0C0A3 Gzmn-202ENSMUST00000225535 989 ntBASIC13.14□□□□□ -0.31
Chmp6P0C0A3 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chmp6P0C0A3 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chmp6P0C0A3 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chmp6P0C0A3 Sgpp2-201ENSMUST00000036172 4002 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chmp6P0C0A3 Igfbp5-201ENSMUST00000027377 6006 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chmp6P0C0A3 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
Chmp6P0C0A3 Gm43727-201ENSMUST00000198021 2647 ntBASIC13.14□□□□□ -0.31
Chmp6P0C0A3 AC126444.1-201ENSMUST00000225938 1768 ntBASIC13.14□□□□□ -0.31
Chmp6P0C0A3 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chmp6P0C0A3 Gm34785-201ENSMUST00000222571 4582 ntTSL 5 BASIC13.14□□□□□ -0.31
Chmp6P0C0A3 Gcc1-202ENSMUST00000090511 4650 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chmp6P0C0A3 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chmp6P0C0A3 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chmp6P0C0A3 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Chmp6P0C0A3 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Stox2-209ENSMUST00000211882 9696 ntTSL 5 BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Gabre-201ENSMUST00000064780 4306 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Chd3-202ENSMUST00000108661 7261 ntAPPRIS P2 TSL 5 BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Fut4-201ENSMUST00000061498 4074 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Nars2-201ENSMUST00000044466 3778 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Fmo2-202ENSMUST00000111510 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 4933412E12Rik-201ENSMUST00000217853 1698 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Gm44967-201ENSMUST00000207047 631 ntBASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 CT009713.10-202ENSMUST00000225734 696 ntBASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Kalrn-211ENSMUST00000114966 3857 ntTSL 5 BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Prkd1-201ENSMUST00000002765 3653 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Zfp341-201ENSMUST00000081926 3299 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Bbs1-201ENSMUST00000053506 5581 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Gm5780-201ENSMUST00000217774 1834 ntBASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Trpv3-201ENSMUST00000049676 5835 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 AC164426.2-201ENSMUST00000225993 2492 ntBASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Robo3-201ENSMUST00000034643 4712 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Chmp6P0C0A3 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Gm7224-201ENSMUST00000121359 2066 ntBASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Dcaf17-209ENSMUST00000154704 7739 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Arsa-202ENSMUST00000165199 3492 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Cdc14a-201ENSMUST00000090464 4485 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chmp6P0C0A3 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms