Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Pebp1-201ENSMUST00000036951 1240 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Chd6A3KFM7 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC9.7□□□□□ -0.86
Chd6A3KFM7 Teddm3-201ENSMUST00000170665 1346 ntAPPRIS P1 BASIC9.7□□□□□ -0.86
Chd6A3KFM7 2700068H02Rik-201ENSMUST00000137882 1872 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
Chd6A3KFM7 AC173482.6-201ENSMUST00000225889 1741 ntBASIC9.7□□□□□ -0.86
Chd6A3KFM7 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Chd6A3KFM7 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC9.7□□□□□ -0.86
Chd6A3KFM7 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Gm15615-201ENSMUST00000118876 198 ntBASIC9.69□□□□□ -0.86
Chd6A3KFM7 Gemin7-205ENSMUST00000122127 652 ntAPPRIS P1 TSL 3 BASIC9.69□□□□□ -0.86
Chd6A3KFM7 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Gm23119-201ENSMUST00000158610 140 ntBASIC9.69□□□□□ -0.86
Chd6A3KFM7 0610033M10Rik-201ENSMUST00000204546 506 ntTSL 5 BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Gm18466-201ENSMUST00000209147 499 ntBASIC9.69□□□□□ -0.86
Chd6A3KFM7 Gm15802-202ENSMUST00000209595 1094 ntTSL 5 BASIC9.69□□□□□ -0.86
Chd6A3KFM7 AY761184-201ENSMUST00000071886 503 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Chit1-203ENSMUST00000160060 1580 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Pram1-201ENSMUST00000052079 2278 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Gm13505-201ENSMUST00000121666 817 ntBASIC9.69□□□□□ -0.86
Chd6A3KFM7 Cideb-201ENSMUST00000001497 1212 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Gm11655-201ENSMUST00000153899 765 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Gm19015-201ENSMUST00000184002 1189 ntBASIC9.69□□□□□ -0.86
Chd6A3KFM7 Gpx1-204ENSMUST00000193987 653 ntTSL 3 BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Gm21221-201ENSMUST00000202876 1073 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Gm8574-201ENSMUST00000203207 924 ntBASIC9.69□□□□□ -0.86
Chd6A3KFM7 Gm6518-201ENSMUST00000208450 342 ntBASIC9.69□□□□□ -0.86
Chd6A3KFM7 n-R5s71-201ENSMUST00000093668 119 ntBASIC9.69□□□□□ -0.86
Chd6A3KFM7 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Gm37795-201ENSMUST00000194216 2459 ntBASIC9.69□□□□□ -0.86
Chd6A3KFM7 Gapdhs-203ENSMUST00000182634 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Gm23129-201ENSMUST00000104259 132 ntBASIC9.69□□□□□ -0.86
Chd6A3KFM7 Srpk1-202ENSMUST00000114767 445 ntTSL 3 BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Fam107b-202ENSMUST00000115052 861 ntTSL 3 BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Mir1249-201ENSMUST00000116791 98 ntBASIC9.69□□□□□ -0.86
Chd6A3KFM7 Gm14630-201ENSMUST00000118057 246 ntBASIC9.69□□□□□ -0.86
Chd6A3KFM7 Gm26272-201ENSMUST00000179241 132 ntBASIC9.69□□□□□ -0.86
Chd6A3KFM7 Gm42655-201ENSMUST00000202782 1134 ntBASIC9.69□□□□□ -0.86
Chd6A3KFM7 AC154213.1-201ENSMUST00000228234 583 ntBASIC9.69□□□□□ -0.86
Chd6A3KFM7 Gm10263-201ENSMUST00000085163 300 ntBASIC9.69□□□□□ -0.86
Chd6A3KFM7 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Chd6A3KFM7 Gm43134-201ENSMUST00000199434 1886 ntBASIC9.68□□□□□ -0.86
Chd6A3KFM7 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Chd6A3KFM7 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Chd6A3KFM7 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC9.68□□□□□ -0.86
Chd6A3KFM7 Gm11033-201ENSMUST00000127757 1445 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Chd6A3KFM7 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Chd6A3KFM7 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Chd6A3KFM7 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Chd6A3KFM7 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Chd6A3KFM7 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC9.68□□□□□ -0.86
Chd6A3KFM7 Gm16209-201ENSMUST00000118457 627 ntBASIC9.68□□□□□ -0.86
Chd6A3KFM7 Rpl19-ps1-201ENSMUST00000121059 591 ntBASIC9.68□□□□□ -0.86
Chd6A3KFM7 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC9.68□□□□□ -0.86
Chd6A3KFM7 Gm10171-201ENSMUST00000126220 628 ntBASIC9.68□□□□□ -0.86
Chd6A3KFM7 Mir124-2hg-203ENSMUST00000186923 673 ntTSL 3 BASIC9.68□□□□□ -0.86
Chd6A3KFM7 Gm43244-201ENSMUST00000196994 1285 ntBASIC9.68□□□□□ -0.86
Chd6A3KFM7 Gm35657-201ENSMUST00000215869 989 ntTSL 5 BASIC9.68□□□□□ -0.86
Chd6A3KFM7 Tcl1b1-202ENSMUST00000222342 664 ntAPPRIS ALT2 TSL 2 BASIC9.68□□□□□ -0.86
Chd6A3KFM7 Tnnt1-201ENSMUST00000071798 1027 ntAPPRIS P3 TSL 1 (best) BASIC9.68□□□□□ -0.86
Chd6A3KFM7 Gm10233-201ENSMUST00000089275 628 ntBASIC9.68□□□□□ -0.86
Chd6A3KFM7 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Chd6A3KFM7 Zeb2-211ENSMUST00000153561 2070 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Chd6A3KFM7 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Chd6A3KFM7 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC9.68□□□□□ -0.86
Chd6A3KFM7 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Chd6A3KFM7 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC9.68□□□□□ -0.86
Chd6A3KFM7 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Chd6A3KFM7 Slc38a5-201ENSMUST00000033512 1868 ntAPPRIS P2 TSL 1 (best) BASIC9.68□□□□□ -0.86
Chd6A3KFM7 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Chd6A3KFM7 Emp1-201ENSMUST00000032330 2721 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Chd6A3KFM7 Eno1-201ENSMUST00000080149 1902 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Chd6A3KFM7 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC9.68□□□□□ -0.86
Chd6A3KFM7 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Chd6A3KFM7 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Chd6A3KFM7 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC9.68□□□□□ -0.86
Chd6A3KFM7 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC9.68□□□□□ -0.86
Chd6A3KFM7 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms