Protein–RNA interactions for Protein: Q9Z0H3

Smarcb1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, mousemouse

Predictions only

Length 385 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarcb1Q9Z0H3 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Smarcb1Q9Z0H3 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Smarcb1Q9Z0H3 Epb41-207ENSMUST00000105975 5235 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Smarcb1Q9Z0H3 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Smarcb1Q9Z0H3 Gm9129-201ENSMUST00000218173 1689 ntBASIC12.54□□□□□ -0.4
Smarcb1Q9Z0H3 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Smarcb1Q9Z0H3 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Smarcb1Q9Z0H3 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Smarcb1Q9Z0H3 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Smarcb1Q9Z0H3 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC12.54□□□□□ -0.4
Smarcb1Q9Z0H3 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Smarcb1Q9Z0H3 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Smarcb1Q9Z0H3 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Smarcb1Q9Z0H3 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Krtap4-8-201ENSMUST00000107439 983 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Pmp22-203ENSMUST00000108701 723 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Gm15207-201ENSMUST00000119259 442 ntBASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Timm22-202ENSMUST00000120699 746 ntTSL 3 BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 n-R5s14-201ENSMUST00000122688 107 ntBASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Gm10774-201ENSMUST00000188689 204 ntBASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Gm37695-201ENSMUST00000191765 530 ntTSL 5 BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Gm9555-201ENSMUST00000200908 583 ntBASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Gm17931-201ENSMUST00000208132 634 ntBASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Olfr959-201ENSMUST00000079178 1055 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Mynn-202ENSMUST00000192715 5555 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Fam227a-202ENSMUST00000109646 1896 ntTSL 5 BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Smarcb1Q9Z0H3 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Smarcb1Q9Z0H3 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Smarcb1Q9Z0H3 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Smarcb1Q9Z0H3 Odf2-208ENSMUST00000113763 2364 ntAPPRIS P3 TSL 5 BASIC12.52□□□□□ -0.4
Smarcb1Q9Z0H3 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Smarcb1Q9Z0H3 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Smarcb1Q9Z0H3 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Smarcb1Q9Z0H3 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Smarcb1Q9Z0H3 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Smarcb1Q9Z0H3 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
Smarcb1Q9Z0H3 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
Smarcb1Q9Z0H3 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 Rasgef1a-202ENSMUST00000203482 2227 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 Fuca2-203ENSMUST00000121465 5741 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 Odf4-202ENSMUST00000125134 646 ntTSL 3 BASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 Gm16172-201ENSMUST00000156224 682 ntTSL 3 BASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 Cldn16-202ENSMUST00000161053 1173 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 Gm9034-201ENSMUST00000182071 1005 ntBASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 Gm21221-201ENSMUST00000202876 1073 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 AC113082.1-201ENSMUST00000217324 327 ntBASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 Zfp108-203ENSMUST00000206777 2562 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 Hrct1-201ENSMUST00000095109 1452 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC12.52□□□□□ -0.41
Smarcb1Q9Z0H3 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms