Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Mms19-201ENSMUST00000026168 3162 ntAPPRIS ALT2 TSL 5 BASIC9.63□□□□□ -0.87
Smco4Q9JIS3 Gm11033-203ENSMUST00000156185 2321 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Smco4Q9JIS3 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC9.63□□□□□ -0.87
Smco4Q9JIS3 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC9.63□□□□□ -0.87
Smco4Q9JIS3 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC9.63□□□□□ -0.87
Smco4Q9JIS3 Cacna1c-210ENSMUST00000187474 6911 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.87
Smco4Q9JIS3 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Smco4Q9JIS3 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC9.63□□□□□ -0.87
Smco4Q9JIS3 Gm45218-201ENSMUST00000205533 1678 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Smco4Q9JIS3 Polq-202ENSMUST00000071452 7290 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Smco4Q9JIS3 Thsd7a-206ENSMUST00000172356 10998 ntAPPRIS ALT2 TSL 5 BASIC9.63□□□□□ -0.87
Smco4Q9JIS3 Dyrk4-202ENSMUST00000078521 2252 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Smco4Q9JIS3 Dnmbp-206ENSMUST00000212592 3901 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Smco4Q9JIS3 Slc10a7-202ENSMUST00000209490 3485 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Smco4Q9JIS3 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC9.63□□□□□ -0.87
Smco4Q9JIS3 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC9.63□□□□□ -0.87
Smco4Q9JIS3 Gm20755-201ENSMUST00000196893 1827 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Smco4Q9JIS3 Col4a6-201ENSMUST00000101205 6648 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Smco4Q9JIS3 Pacsin1-201ENSMUST00000045896 4190 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Smco4Q9JIS3 Tlr12-201ENSMUST00000074829 3177 ntAPPRIS P1 BASIC9.63□□□□□ -0.87
Smco4Q9JIS3 Zfp189-202ENSMUST00000107696 2965 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Smco4Q9JIS3 Gm7964-201ENSMUST00000051522 1378 ntBASIC9.63□□□□□ -0.87
Smco4Q9JIS3 Edaradd-201ENSMUST00000179308 6668 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Smco4Q9JIS3 Kansl1-201ENSMUST00000018556 5061 ntAPPRIS P2 TSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Fam53c-202ENSMUST00000097622 4256 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Cep112-213ENSMUST00000150863 3453 ntTSL 5 BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Gm5878-201ENSMUST00000113802 4643 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Mdm1-201ENSMUST00000020437 3074 ntAPPRIS P3 TSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Mab21l1-201ENSMUST00000075422 2492 ntAPPRIS P1 BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Ehmt1-205ENSMUST00000114432 4539 ntAPPRIS ALT2 TSL 5 BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Cxcr5-202ENSMUST00000179828 2824 ntAPPRIS P1 TSL 5 BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Erbb3-201ENSMUST00000082059 6016 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Capza1-201ENSMUST00000094028 3193 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Anks1b-218ENSMUST00000182595 3715 ntTSL 5 BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Dkk2-201ENSMUST00000029665 3705 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Pnpla3-201ENSMUST00000045289 4640 ntAPPRIS P1 TSL 5 BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Gm28774-201ENSMUST00000187087 1498 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Gtf2ird1-204ENSMUST00000100652 3693 ntAPPRIS P4 TSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Gm28659-201ENSMUST00000188013 759 ntBASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Gm20553-201ENSMUST00000204205 844 ntBASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 AC135669.1-202ENSMUST00000216742 540 ntBASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Gm28268-201ENSMUST00000188966 2528 ntTSL 5 BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Pyurf-201ENSMUST00000053386 3573 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Gm11298-201ENSMUST00000120503 1799 ntBASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Olfr707-204ENSMUST00000213251 1777 ntAPPRIS P1 TSL 5 BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Nrn1-204ENSMUST00000224323 1779 ntBASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Ppp1r17-201ENSMUST00000052827 1757 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Ap1b1-201ENSMUST00000009234 4085 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Ap1s2-203ENSMUST00000112294 3199 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Pou6f1-204ENSMUST00000176271 4575 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Rpap2-202ENSMUST00000112650 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Slc45a1-202ENSMUST00000117997 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Pip4k2c-201ENSMUST00000013970 3307 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Gm5833-202ENSMUST00000190707 1932 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Trappc9-202ENSMUST00000089770 4047 ntAPPRIS P4 TSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Kcnmb3-201ENSMUST00000164954 1715 ntAPPRIS P1 TSL 5 BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Trpc6-202ENSMUST00000214596 2913 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Ncstn-201ENSMUST00000003550 2901 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Nup210-202ENSMUST00000113509 6893 ntAPPRIS ALT2 TSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Kirrel3-201ENSMUST00000045091 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Aen-203ENSMUST00000107425 4956 ntAPPRIS P3 TSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Riox2-202ENSMUST00000120667 2200 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Tbc1d24-209ENSMUST00000201301 4261 ntTSL 5 BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Matn2-205ENSMUST00000227759 3569 ntAPPRIS ALT2 BASIC9.62□□□□□ -0.87
Smco4Q9JIS3 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Smco4Q9JIS3 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Smco4Q9JIS3 Amigo3-201ENSMUST00000085060 2543 ntAPPRIS P1 BASIC9.61□□□□□ -0.87
Smco4Q9JIS3 C1rl-201ENSMUST00000049124 3010 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Smco4Q9JIS3 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC9.61□□□□□ -0.87
Smco4Q9JIS3 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC9.61□□□□□ -0.87
Smco4Q9JIS3 Tmem109-201ENSMUST00000038128 2188 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Smco4Q9JIS3 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
Smco4Q9JIS3 Brat1-201ENSMUST00000041588 3333 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
Smco4Q9JIS3 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Smco4Q9JIS3 Tcf4-251ENSMUST00000202474 1810 ntTSL 5 BASIC9.61□□□□□ -0.87
Smco4Q9JIS3 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Smco4Q9JIS3 Med17-201ENSMUST00000034411 3964 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Smco4Q9JIS3 Tnip1-203ENSMUST00000102731 2973 ntAPPRIS P3 TSL 5 BASIC9.61□□□□□ -0.87
Smco4Q9JIS3 Adam8-202ENSMUST00000106069 3117 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
Smco4Q9JIS3 Adam8-201ENSMUST00000026546 3100 ntAPPRIS ALT2 TSL 1 (best) BASIC9.61□□□□□ -0.87
Smco4Q9JIS3 Krt75-201ENSMUST00000042957 3266 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Smco4Q9JIS3 Atp4a-204ENSMUST00000170371 3447 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
Smco4Q9JIS3 Kat7-205ENSMUST00000107734 3560 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Retrieved 100 of 76,532 protein–RNA pairs in 95 ms