Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Usp40Q8BWR4 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Usp40Q8BWR4 Tirap-203ENSMUST00000176531 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Usp40Q8BWR4 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Usp40Q8BWR4 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Usp40Q8BWR4 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Usp40Q8BWR4 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Usp40Q8BWR4 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Usp40Q8BWR4 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Usp40Q8BWR4 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Usp40Q8BWR4 Gm42748-201ENSMUST00000199354 2341 ntBASIC16.5■□□□□ 0.23
Usp40Q8BWR4 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC16.5■□□□□ 0.23
Usp40Q8BWR4 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Usp40Q8BWR4 Dnajb6-203ENSMUST00000114839 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Usp40Q8BWR4 Camk1d-202ENSMUST00000114987 1295 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Usp40Q8BWR4 Gm11836-201ENSMUST00000121022 441 ntBASIC16.5■□□□□ 0.23
Usp40Q8BWR4 Tsc22d1-206ENSMUST00000134109 801 ntTSL 2 BASIC16.5■□□□□ 0.23
Usp40Q8BWR4 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Usp40Q8BWR4 F12-202ENSMUST00000170921 478 ntTSL 3 BASIC16.5■□□□□ 0.23
Usp40Q8BWR4 Gm23045-201ENSMUST00000175041 96 ntBASIC16.5■□□□□ 0.23
Usp40Q8BWR4 Gm37299-201ENSMUST00000193951 826 ntBASIC16.5■□□□□ 0.23
Usp40Q8BWR4 Gm21221-201ENSMUST00000202876 1073 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Usp40Q8BWR4 Gm44270-201ENSMUST00000203084 1234 ntBASIC16.5■□□□□ 0.23
Usp40Q8BWR4 Mrpl30-201ENSMUST00000027256 969 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Usp40Q8BWR4 Try10-201ENSMUST00000072103 860 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Usp40Q8BWR4 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Usp40Q8BWR4 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Usp40Q8BWR4 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Usp40Q8BWR4 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Usp40Q8BWR4 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Usp40Q8BWR4 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Usp40Q8BWR4 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Usp40Q8BWR4 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Usp40Q8BWR4 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Usp40Q8BWR4 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Usp40Q8BWR4 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Usp40Q8BWR4 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Usp40Q8BWR4 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
Usp40Q8BWR4 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Usp40Q8BWR4 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Usp40Q8BWR4 Gstm4-202ENSMUST00000106670 777 ntTSL 3 BASIC16.49■□□□□ 0.23
Usp40Q8BWR4 Gm16166-201ENSMUST00000118291 787 ntBASIC16.49■□□□□ 0.23
Usp40Q8BWR4 Gm8737-201ENSMUST00000122208 642 ntBASIC16.49■□□□□ 0.23
Usp40Q8BWR4 Gm13073-201ENSMUST00000134059 486 ntTSL 3 BASIC16.49■□□□□ 0.23
Usp40Q8BWR4 Anp32a-205ENSMUST00000135395 924 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Usp40Q8BWR4 Gm23771-201ENSMUST00000178702 110 ntBASIC16.49■□□□□ 0.23
Usp40Q8BWR4 Gm4654-201ENSMUST00000183305 982 ntBASIC16.49■□□□□ 0.23
Usp40Q8BWR4 Med8-201ENSMUST00000019229 1145 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Usp40Q8BWR4 Gm6450-201ENSMUST00000200896 574 ntBASIC16.49■□□□□ 0.23
Usp40Q8BWR4 Gm45285-201ENSMUST00000210418 749 ntTSL 3 BASIC16.49■□□□□ 0.23
Usp40Q8BWR4 Gm2517-201ENSMUST00000215651 348 ntBASIC16.49■□□□□ 0.23
Usp40Q8BWR4 AC153929.1-201ENSMUST00000219009 303 ntBASIC16.49■□□□□ 0.23
Usp40Q8BWR4 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Usp40Q8BWR4 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Usp40Q8BWR4 Rpl9-ps6-201ENSMUST00000078034 691 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Usp40Q8BWR4 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Usp40Q8BWR4 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Usp40Q8BWR4 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Usp40Q8BWR4 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC16.49■□□□□ 0.23
Usp40Q8BWR4 Gm37019-201ENSMUST00000192133 2134 ntBASIC16.49■□□□□ 0.23
Usp40Q8BWR4 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Usp40Q8BWR4 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Usp40Q8BWR4 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Usp40Q8BWR4 Gm8522-201ENSMUST00000118416 1929 ntBASIC16.49■□□□□ 0.23
Usp40Q8BWR4 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Usp40Q8BWR4 Tbc1d24-209ENSMUST00000201301 4261 ntTSL 5 BASIC16.48■□□□□ 0.23
Usp40Q8BWR4 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Usp40Q8BWR4 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Usp40Q8BWR4 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Usp40Q8BWR4 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Usp40Q8BWR4 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Usp40Q8BWR4 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Usp40Q8BWR4 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Usp40Q8BWR4 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Usp40Q8BWR4 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Usp40Q8BWR4 Gm16071-201ENSMUST00000119589 793 ntBASIC16.48■□□□□ 0.23
Usp40Q8BWR4 Gm11246-201ENSMUST00000120880 345 ntBASIC16.48■□□□□ 0.23
Usp40Q8BWR4 Dnmt3bos-201ENSMUST00000124988 718 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Usp40Q8BWR4 Gm11587-201ENSMUST00000128274 1120 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Usp40Q8BWR4 4931406G06Rik-201ENSMUST00000147848 1252 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Usp40Q8BWR4 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC16.48■□□□□ 0.23
Usp40Q8BWR4 1810020O05Rik-201ENSMUST00000162547 1047 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Usp40Q8BWR4 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Usp40Q8BWR4 Gm27910-201ENSMUST00000185004 107 ntBASIC16.48■□□□□ 0.23
Usp40Q8BWR4 1700088E04Rik-203ENSMUST00000186053 535 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Usp40Q8BWR4 Gm17826-201ENSMUST00000189720 798 ntBASIC16.48■□□□□ 0.23
Usp40Q8BWR4 Gm5542-201ENSMUST00000195485 1089 ntBASIC16.48■□□□□ 0.23
Usp40Q8BWR4 Gm45113-201ENSMUST00000207518 165 ntBASIC16.48■□□□□ 0.23
Usp40Q8BWR4 AC159890.1-201ENSMUST00000215382 684 ntTSL 5 BASIC16.48■□□□□ 0.23
Usp40Q8BWR4 CT485607.1-201ENSMUST00000216100 85 ntBASIC16.48■□□□□ 0.23
Usp40Q8BWR4 4930423D24Rik-202ENSMUST00000219785 554 ntTSL 5 BASIC16.48■□□□□ 0.23
Usp40Q8BWR4 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Usp40Q8BWR4 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Usp40Q8BWR4 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Usp40Q8BWR4 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Usp40Q8BWR4 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
Usp40Q8BWR4 Prkag3-206ENSMUST00000188073 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Usp40Q8BWR4 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Usp40Q8BWR4 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC16.47■□□□□ 0.23
Usp40Q8BWR4 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 42.2 ms