Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Clec16a-203ENSMUST00000115823 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 B930036N10Rik-202ENSMUST00000181170 3544 ntBASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Sema4c-208ENSMUST00000195620 3640 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Gdap2-201ENSMUST00000029459 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 AC160405.1-201ENSMUST00000218207 1545 ntBASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Kdm5c-201ENSMUST00000082177 5520 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Zbtb24-205ENSMUST00000216656 2476 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Tmem129-201ENSMUST00000019439 2828 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Dach2-201ENSMUST00000067219 2520 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Abcd3-201ENSMUST00000029770 3489 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Gm13316-201ENSMUST00000140537 691 ntBASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Rn7s1-201ENSMUST00000174924 300 ntBASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Rn7s2-201ENSMUST00000175032 300 ntBASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Gm26461-201ENSMUST00000175064 290 ntBASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Hspb2-202ENSMUST00000217159 552 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Gm32025-201ENSMUST00000217960 307 ntBASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Gm11361-201ENSMUST00000223428 607 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Sertad1-201ENSMUST00000008528 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Telo2-202ENSMUST00000115181 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Gm2128-201ENSMUST00000108009 2560 ntBASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Zfp108-203ENSMUST00000206777 2562 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Stxbp6-202ENSMUST00000120531 4209 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Nek5-202ENSMUST00000209656 2253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Grin1-208ENSMUST00000114318 3920 ntTSL 5 BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Gm38157-201ENSMUST00000194178 1698 ntBASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Dusp6-204ENSMUST00000220291 2359 ntTSL 5 BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Gm34370-201ENSMUST00000209385 1410 ntTSL 5 BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Sh3rf1Q69ZI1 Cbx7-201ENSMUST00000089293 3388 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Sh3rf1Q69ZI1 Foxn4-201ENSMUST00000044790 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Sh3rf1Q69ZI1 Wif1-201ENSMUST00000020439 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Sh3rf1Q69ZI1 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Sh3rf1Q69ZI1 Pitpnm3-201ENSMUST00000075258 6555 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
Sh3rf1Q69ZI1 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
Sh3rf1Q69ZI1 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Sh3rf1Q69ZI1 Plekhn1-202ENSMUST00000105571 2004 ntTSL 5 BASIC12.27□□□□□ -0.44
Sh3rf1Q69ZI1 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Pex11g-201ENSMUST00000004686 2870 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Ino80c-204ENSMUST00000153360 2498 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Gm14921-201ENSMUST00000118643 908 ntBASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Gm8176-201ENSMUST00000191297 1099 ntBASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Gm43416-201ENSMUST00000201916 1015 ntBASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Fut2-201ENSMUST00000069800 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Olfr482-202ENSMUST00000217304 2612 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Gm14137-201ENSMUST00000069711 3067 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Nrros-202ENSMUST00000115163 3559 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Nrxn1-202ENSMUST00000072671 8118 ntTSL 5 BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Ldhd-201ENSMUST00000070004 2273 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Mfap3l-203ENSMUST00000161421 4142 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Vamp1-201ENSMUST00000032487 2772 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Daxx-207ENSMUST00000174146 2424 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sh3rf1Q69ZI1 Ldb3-201ENSMUST00000022327 5119 ntAPPRIS P4 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Ush1c-201ENSMUST00000009667 3072 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Pmaip1-201ENSMUST00000025399 2646 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Orc5-201ENSMUST00000030872 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Car10-206ENSMUST00000107863 3334 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Zfp251-201ENSMUST00000080406 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms