Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Six4Q61321 Gm45428-201ENSMUST00000209619 1789 ntBASIC12.16□□□□□ -0.46
Six4Q61321 Gm22133-201ENSMUST00000102082 109 ntBASIC12.16□□□□□ -0.46
Six4Q61321 Gm12380-201ENSMUST00000119012 544 ntBASIC12.16□□□□□ -0.46
Six4Q61321 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Six4Q61321 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Six4Q61321 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC12.16□□□□□ -0.46
Six4Q61321 Spata3-210ENSMUST00000153247 884 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Six4Q61321 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
Six4Q61321 Gm27627-201ENSMUST00000183644 150 ntBASIC12.16□□□□□ -0.46
Six4Q61321 Gm29615-201ENSMUST00000185371 697 ntBASIC12.16□□□□□ -0.46
Six4Q61321 Gm28224-201ENSMUST00000186078 697 ntBASIC12.16□□□□□ -0.46
Six4Q61321 Gm29001-201ENSMUST00000186177 697 ntBASIC12.16□□□□□ -0.46
Six4Q61321 Gm28292-201ENSMUST00000186593 697 ntBASIC12.16□□□□□ -0.46
Six4Q61321 Gm28101-201ENSMUST00000187608 697 ntBASIC12.16□□□□□ -0.46
Six4Q61321 Gm29076-201ENSMUST00000187689 697 ntBASIC12.16□□□□□ -0.46
Six4Q61321 Gm28302-201ENSMUST00000187931 697 ntBASIC12.16□□□□□ -0.46
Six4Q61321 Gm28646-201ENSMUST00000188220 697 ntBASIC12.16□□□□□ -0.46
Six4Q61321 Gm28205-201ENSMUST00000189177 697 ntBASIC12.16□□□□□ -0.46
Six4Q61321 Gm29032-201ENSMUST00000189797 697 ntBASIC12.16□□□□□ -0.46
Six4Q61321 Gm28695-201ENSMUST00000190300 697 ntBASIC12.16□□□□□ -0.46
Six4Q61321 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC12.16□□□□□ -0.46
Six4Q61321 Gm37448-201ENSMUST00000192795 697 ntBASIC12.16□□□□□ -0.46
Six4Q61321 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Six4Q61321 Gm18056-201ENSMUST00000207670 568 ntBASIC12.16□□□□□ -0.46
Six4Q61321 Gm18061-201ENSMUST00000208350 562 ntBASIC12.16□□□□□ -0.46
Six4Q61321 Gm18063-201ENSMUST00000208529 568 ntBASIC12.16□□□□□ -0.46
Six4Q61321 Gm18052-201ENSMUST00000208750 559 ntBASIC12.16□□□□□ -0.46
Six4Q61321 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Six4Q61321 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Six4Q61321 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Six4Q61321 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Six4Q61321 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Six4Q61321 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Six4Q61321 AC173482.6-201ENSMUST00000225889 1741 ntBASIC12.16□□□□□ -0.46
Six4Q61321 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC12.16□□□□□ -0.46
Six4Q61321 AC129931.1-201ENSMUST00000228865 1861 ntBASIC12.16□□□□□ -0.46
Six4Q61321 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Six4Q61321 Xylb-201ENSMUST00000039610 3383 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Six4Q61321 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC12.16□□□□□ -0.46
Six4Q61321 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Six4Q61321 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Six4Q61321 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Six4Q61321 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Six4Q61321 Crem-233ENSMUST00000154135 2530 ntTSL 5 BASIC12.15□□□□□ -0.46
Six4Q61321 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Six4Q61321 Gm5525-201ENSMUST00000190438 1312 ntBASIC12.15□□□□□ -0.46
Six4Q61321 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Six4Q61321 Fbln7-202ENSMUST00000110324 3228 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Six4Q61321 Fam198a-203ENSMUST00000214536 2789 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Six4Q61321 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
Six4Q61321 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Six4Q61321 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Six4Q61321 Ankzf1-208ENSMUST00000152233 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Six4Q61321 5930412G12Rik-201ENSMUST00000091324 2403 ntTSL 5 BASIC12.15□□□□□ -0.46
Six4Q61321 AC108858.2-201ENSMUST00000228186 1425 ntBASIC12.15□□□□□ -0.46
Six4Q61321 Cc2d1a-202ENSMUST00000117424 3262 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Six4Q61321 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Six4Q61321 Gm26286-201ENSMUST00000104166 134 ntBASIC12.15□□□□□ -0.46
Six4Q61321 Eif5a-205ENSMUST00000108608 775 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Six4Q61321 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC12.15□□□□□ -0.46
Six4Q61321 Gm11511-201ENSMUST00000118146 540 ntBASIC12.15□□□□□ -0.46
Six4Q61321 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC12.15□□□□□ -0.46
Six4Q61321 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC12.15□□□□□ -0.46
Six4Q61321 Gm19817-201ENSMUST00000199764 2132 ntBASIC12.15□□□□□ -0.46
Six4Q61321 Gm8956-201ENSMUST00000203939 825 ntBASIC12.15□□□□□ -0.46
Six4Q61321 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Six4Q61321 Gm9176-201ENSMUST00000219955 1120 ntBASIC12.15□□□□□ -0.46
Six4Q61321 AC121960.1-201ENSMUST00000227982 564 ntBASIC12.15□□□□□ -0.46
Six4Q61321 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Six4Q61321 Ndufaf5-201ENSMUST00000044825 1166 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Six4Q61321 Gm8385-201ENSMUST00000058999 643 ntBASIC12.15□□□□□ -0.46
Six4Q61321 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Six4Q61321 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Six4Q61321 AC138329.2-201ENSMUST00000225579 1842 ntBASIC12.15□□□□□ -0.46
Six4Q61321 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Six4Q61321 Elmod3-204ENSMUST00000141833 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Six4Q61321 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC12.15□□□□□ -0.46
Six4Q61321 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Six4Q61321 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC12.15□□□□□ -0.46
Six4Q61321 Pros1-201ENSMUST00000023629 3303 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Six4Q61321 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Six4Q61321 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Six4Q61321 Nfatc2-202ENSMUST00000074618 6637 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Six4Q61321 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Six4Q61321 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Six4Q61321 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC12.15□□□□□ -0.46
Six4Q61321 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Six4Q61321 Gck-201ENSMUST00000102920 2727 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Six4Q61321 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.47
Six4Q61321 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.47
Six4Q61321 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.47
Six4Q61321 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Six4Q61321 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Six4Q61321 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Six4Q61321 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Six4Q61321 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Six4Q61321 Csrnp2-201ENSMUST00000061457 4126 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Six4Q61321 Rcor3-201ENSMUST00000073279 3748 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Six4Q61321 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 63.1 ms