Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Gm27232-201ENSMUST00000184373 597 ntTSL 3 BASIC11.02□□□□□ -0.65
Usf1Q61069 Gm29187-201ENSMUST00000186681 689 ntTSL 3 BASIC11.02□□□□□ -0.65
Usf1Q61069 Gm45441-202ENSMUST00000209301 1235 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Usf1Q61069 Gm18041-201ENSMUST00000218210 618 ntBASIC11.02□□□□□ -0.65
Usf1Q61069 1700011B04Rik-204ENSMUST00000220859 422 ntTSL 5 BASIC11.02□□□□□ -0.65
Usf1Q61069 Gm10135-201ENSMUST00000043711 252 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.65
Usf1Q61069 Omt2b-201ENSMUST00000043734 735 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.65
Usf1Q61069 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Usf1Q61069 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Usf1Q61069 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Usf1Q61069 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Usf1Q61069 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
Usf1Q61069 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC11.02□□□□□ -0.65
Usf1Q61069 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Usf1Q61069 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Usf1Q61069 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Usf1Q61069 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Usf1Q61069 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Usf1Q61069 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Usf1Q61069 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Usf1Q61069 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
Usf1Q61069 Pstpip2-201ENSMUST00000114741 1395 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Usf1Q61069 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
Usf1Q61069 Gm6903-201ENSMUST00000160509 1366 ntBASIC11.02□□□□□ -0.65
Usf1Q61069 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Usf1Q61069 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC11.02□□□□□ -0.65
Usf1Q61069 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Usf1Q61069 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Usf1Q61069 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Usf1Q61069 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Grk6-205ENSMUST00000224653 2976 ntBASIC11.01□□□□□ -0.65
Usf1Q61069 Gm13910-201ENSMUST00000121752 1428 ntBASIC11.01□□□□□ -0.65
Usf1Q61069 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC11.01□□□□□ -0.65
Usf1Q61069 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Psmc2-201ENSMUST00000030769 1785 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Wdr33-201ENSMUST00000025264 6206 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
Usf1Q61069 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC11.01□□□□□ -0.65
Usf1Q61069 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC11.01□□□□□ -0.65
Usf1Q61069 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC11.01□□□□□ -0.65
Usf1Q61069 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC11.01□□□□□ -0.65
Usf1Q61069 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Ccdc163-202ENSMUST00000106462 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Vbp1-202ENSMUST00000114070 632 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Rbm3-205ENSMUST00000115619 969 ntAPPRIS ALT1 TSL 3 BASIC11.01□□□□□ -0.65
Usf1Q61069 Gm16001-201ENSMUST00000127989 875 ntTSL 3 BASIC11.01□□□□□ -0.65
Usf1Q61069 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Gm15764-201ENSMUST00000150389 672 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC11.01□□□□□ -0.65
Usf1Q61069 Gm5714-201ENSMUST00000197343 566 ntBASIC11.01□□□□□ -0.65
Usf1Q61069 Gm44867-201ENSMUST00000205675 530 ntTSL 3 BASIC11.01□□□□□ -0.65
Usf1Q61069 AC124433.1-201ENSMUST00000224483 1063 ntBASIC11.01□□□□□ -0.65
Usf1Q61069 CT009536.2-201ENSMUST00000225370 665 ntBASIC11.01□□□□□ -0.65
Usf1Q61069 Amtn-201ENSMUST00000073363 1022 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
Usf1Q61069 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC11.01□□□□□ -0.65
Usf1Q61069 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC11.01□□□□□ -0.65
Usf1Q61069 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC11.01□□□□□ -0.65
Usf1Q61069 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Sdad1-201ENSMUST00000031364 5020 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Gm9924-202ENSMUST00000192760 2311 ntBASIC11.01□□□□□ -0.65
Usf1Q61069 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
Usf1Q61069 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Usf1Q61069 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC11□□□□□ -0.65
Usf1Q61069 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Usf1Q61069 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC11□□□□□ -0.65
Usf1Q61069 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Usf1Q61069 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Usf1Q61069 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Usf1Q61069 Gm42829-201ENSMUST00000198417 2585 ntBASIC11□□□□□ -0.65
Usf1Q61069 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Usf1Q61069 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC11□□□□□ -0.65
Usf1Q61069 Igf1-205ENSMUST00000121952 798 ntTSL 3 BASIC11□□□□□ -0.65
Usf1Q61069 Gm28037-201ENSMUST00000122365 611 ntTSL 3 BASIC11□□□□□ -0.65
Usf1Q61069 Rnf181-212ENSMUST00000154098 969 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Usf1Q61069 Gm24398-201ENSMUST00000157870 109 ntBASIC11□□□□□ -0.65
Usf1Q61069 Eef1b2-209ENSMUST00000188524 681 ntTSL 3 BASIC11□□□□□ -0.65
Usf1Q61069 Sdf2-201ENSMUST00000002133 1268 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Usf1Q61069 AC120394.2-201ENSMUST00000213905 702 ntTSL 5 BASIC11□□□□□ -0.65
Usf1Q61069 AC159890.1-201ENSMUST00000215382 684 ntTSL 5 BASIC11□□□□□ -0.65
Usf1Q61069 Olfr368-202ENSMUST00000217299 1200 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 124.4 ms