Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Prg2-201ENSMUST00000028467 838 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Fam206a-201ENSMUST00000045368 4275 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Tpra1-218ENSMUST00000203185 1718 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Sertm1-201ENSMUST00000070342 3083 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Maip1-201ENSMUST00000027114 3540 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Gm5620-201ENSMUST00000077991 1348 ntBASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Nrg1-202ENSMUST00000207417 3138 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Nek4-201ENSMUST00000050171 2793 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Kcnma1-212ENSMUST00000188285 4440 ntAPPRIS P4 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Gm44775-201ENSMUST00000207266 1456 ntBASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Gnb1l-204ENSMUST00000115601 3507 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Neat1-202ENSMUST00000174287 3004 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Galnt10-201ENSMUST00000066987 4715 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Stra6-202ENSMUST00000085677 2725 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Asb13-201ENSMUST00000042288 4453 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Myzap-201ENSMUST00000093823 2283 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Gm43760-201ENSMUST00000202120 3015 ntBASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Gm15808-201ENSMUST00000119046 604 ntBASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Gm11793-201ENSMUST00000120433 981 ntBASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Gm16479-201ENSMUST00000121706 932 ntBASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Gm38341-201ENSMUST00000195357 515 ntBASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Gm6334-201ENSMUST00000207083 228 ntBASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Gm9368-201ENSMUST00000219348 831 ntBASIC11.75□□□□□ -0.53
Col28a1Q2UY11 AC134254.1-201ENSMUST00000221362 167 ntBASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Cts7-204ENSMUST00000225321 1257 ntBASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Sertad1-201ENSMUST00000008528 1233 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Fnbp1-210ENSMUST00000113564 3892 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Dsc2-202ENSMUST00000075214 4508 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Zfp862-ps-201ENSMUST00000203457 3282 ntBASIC11.75□□□□□ -0.53
Col28a1Q2UY11 C2-201ENSMUST00000025230 2641 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Ces2a-201ENSMUST00000034346 1960 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Il2rb-201ENSMUST00000089398 2692 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Gm19792-201ENSMUST00000222522 2021 ntTSL 5 BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Gdpd5-208ENSMUST00000213887 2711 ntTSL 5 BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Abcb8-201ENSMUST00000073076 2939 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Nek5-202ENSMUST00000209656 2253 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Gm43102-201ENSMUST00000201004 2324 ntBASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Nanos2-201ENSMUST00000063563 1563 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Fam160b2-201ENSMUST00000022690 4033 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Col28a1Q2UY11 Olfr1344-202ENSMUST00000218906 2590 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Als2cl-206ENSMUST00000155014 5150 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Agpat3-205ENSMUST00000105390 3513 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Sowahc-201ENSMUST00000182161 4482 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Alox5-202ENSMUST00000164547 1854 ntTSL 5 BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Accs-202ENSMUST00000068513 1872 ntAPPRIS P3 TSL 5 BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Nrd1-203ENSMUST00000106644 3784 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Ntrk2-202ENSMUST00000109838 6846 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 BC048403-201ENSMUST00000065600 3123 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Arhgap4-201ENSMUST00000064376 3353 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Mbnl2-208ENSMUST00000227594 2334 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Tdrd9-201ENSMUST00000079009 4809 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 3830432H09Rik-202ENSMUST00000188909 2414 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Srr-201ENSMUST00000065211 3699 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Gm26185-201ENSMUST00000157692 266 ntBASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Gm9022-201ENSMUST00000182482 992 ntBASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Gm5850-201ENSMUST00000192923 1206 ntBASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 AC093022.1-201ENSMUST00000226949 1072 ntBASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms