Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox9Q04887 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Sox9Q04887 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox9Q04887 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox9Q04887 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Sox9Q04887 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox9Q04887 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox9Q04887 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox9Q04887 Ccdc163-202ENSMUST00000106462 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox9Q04887 Gm5638-201ENSMUST00000118618 1258 ntBASIC12.5□□□□□ -0.41
Sox9Q04887 Ighv1-76-201ENSMUST00000169155 294 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Sox9Q04887 Ighv1-62-1-202ENSMUST00000171270 90 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Sox9Q04887 2700099C18Rik-202ENSMUST00000182402 1275 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Sox9Q04887 Gm18706-201ENSMUST00000210053 1066 ntBASIC12.5□□□□□ -0.41
Sox9Q04887 Gm14005-208ENSMUST00000223654 681 ntBASIC12.5□□□□□ -0.41
Sox9Q04887 CT573086.4-201ENSMUST00000226729 342 ntBASIC12.5□□□□□ -0.41
Sox9Q04887 Taar8b-201ENSMUST00000092654 1035 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Sox9Q04887 Tbc1d22bos-202ENSMUST00000163069 1349 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Sox9Q04887 Gm43334-201ENSMUST00000197740 1318 ntBASIC12.5□□□□□ -0.41
Sox9Q04887 EU599041-202ENSMUST00000205291 1386 ntTSL 5 BASIC12.5□□□□□ -0.41
Sox9Q04887 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC12.5□□□□□ -0.41
Sox9Q04887 Retreg1-206ENSMUST00000228306 1430 ntBASIC12.5□□□□□ -0.41
Sox9Q04887 Gm11405-201ENSMUST00000118689 1556 ntBASIC12.5□□□□□ -0.41
Sox9Q04887 Dnajb6-203ENSMUST00000114839 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox9Q04887 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox9Q04887 AC173482.6-201ENSMUST00000225889 1741 ntBASIC12.5□□□□□ -0.41
Sox9Q04887 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox9Q04887 Slc38a5-203ENSMUST00000115591 1853 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Sox9Q04887 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox9Q04887 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox9Q04887 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Sox9Q04887 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Sox9Q04887 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox9Q04887 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Sox9Q04887 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox9Q04887 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox9Q04887 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Sox9Q04887 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Sox9Q04887 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC12.49□□□□□ -0.41
Sox9Q04887 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox9Q04887 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox9Q04887 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
Sox9Q04887 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox9Q04887 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Sox9Q04887 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox9Q04887 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Sox9Q04887 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Sox9Q04887 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox9Q04887 Kif2a-202ENSMUST00000117423 2023 ntTSL 5 BASIC12.49□□□□□ -0.41
Sox9Q04887 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Sox9Q04887 Bmp4-202ENSMUST00000100676 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox9Q04887 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox9Q04887 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox9Q04887 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox9Q04887 Ndufaf1-203ENSMUST00000110802 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox9Q04887 Gm13351-201ENSMUST00000118087 414 ntBASIC12.49□□□□□ -0.41
Sox9Q04887 Gm15003-201ENSMUST00000118884 446 ntBASIC12.49□□□□□ -0.41
Sox9Q04887 Gad1-207ENSMUST00000148210 1021 ntTSL 5 BASIC12.49□□□□□ -0.41
Sox9Q04887 Rps19-ps9-201ENSMUST00000161787 414 ntBASIC12.49□□□□□ -0.41
Sox9Q04887 Gm8723-201ENSMUST00000166076 820 ntBASIC12.49□□□□□ -0.41
Sox9Q04887 Gm8701-201ENSMUST00000169259 874 ntBASIC12.49□□□□□ -0.41
Sox9Q04887 Gm9507-202ENSMUST00000180157 654 ntBASIC12.49□□□□□ -0.41
Sox9Q04887 Ly6e-207ENSMUST00000187606 735 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
Sox9Q04887 Gm5870-201ENSMUST00000196461 282 ntBASIC12.49□□□□□ -0.41
Sox9Q04887 Gm5714-201ENSMUST00000197343 566 ntBASIC12.49□□□□□ -0.41
Sox9Q04887 Gm21221-201ENSMUST00000202876 1073 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Sox9Q04887 Gm44506-201ENSMUST00000206278 965 ntBASIC12.49□□□□□ -0.41
Sox9Q04887 AC159890.1-201ENSMUST00000215382 684 ntTSL 5 BASIC12.49□□□□□ -0.41
Sox9Q04887 Gm10318-202ENSMUST00000217996 639 ntTSL 5 BASIC12.49□□□□□ -0.41
Sox9Q04887 AC138604.1-201ENSMUST00000226969 739 ntBASIC12.49□□□□□ -0.41
Sox9Q04887 Bloc1s1-201ENSMUST00000026405 550 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox9Q04887 Cxcl1-201ENSMUST00000031327 953 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox9Q04887 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox9Q04887 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox9Q04887 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox9Q04887 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox9Q04887 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Sox9Q04887 Gm9924-202ENSMUST00000192760 2311 ntBASIC12.49□□□□□ -0.41
Sox9Q04887 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox9Q04887 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Sox9Q04887 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox9Q04887 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox9Q04887 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Sox9Q04887 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Sox9Q04887 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox9Q04887 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox9Q04887 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sox9Q04887 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Sox9Q04887 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sox9Q04887 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sox9Q04887 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sox9Q04887 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
Sox9Q04887 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Sox9Q04887 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Sox9Q04887 Oprm1-203ENSMUST00000056385 1440 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sox9Q04887 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Sox9Q04887 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Sox9Q04887 Il1f5-205ENSMUST00000147885 1392 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Sox9Q04887 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sox9Q04887 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 82.3 ms