Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Gm8228-201ENSMUST00000189949 2192 ntBASIC13.27□□□□□ -0.29
Lig3P97386 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Lig3P97386 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Lig3P97386 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Lig3P97386 Kcnj5-201ENSMUST00000034533 4685 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Lig3P97386 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Lig3P97386 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Lig3P97386 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Lig3P97386 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lig3P97386 Avpr2-203ENSMUST00000114395 936 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Lig3P97386 Tmub1-203ENSMUST00000115036 1455 ntTSL 5 BASIC13.26□□□□□ -0.29
Lig3P97386 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Lig3P97386 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC13.26□□□□□ -0.29
Lig3P97386 Zar1l-201ENSMUST00000118769 895 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lig3P97386 Gm12266-201ENSMUST00000120311 962 ntBASIC13.26□□□□□ -0.29
Lig3P97386 Gm11978-201ENSMUST00000122315 466 ntBASIC13.26□□□□□ -0.29
Lig3P97386 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Lig3P97386 Snrpa-206ENSMUST00000163311 1288 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
Lig3P97386 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC13.26□□□□□ -0.29
Lig3P97386 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lig3P97386 Gm38114-201ENSMUST00000191877 1232 ntBASIC13.26□□□□□ -0.29
Lig3P97386 Gm38157-201ENSMUST00000194178 1698 ntBASIC13.26□□□□□ -0.29
Lig3P97386 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lig3P97386 Gm44551-201ENSMUST00000208804 171 ntBASIC13.26□□□□□ -0.29
Lig3P97386 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Lig3P97386 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lig3P97386 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lig3P97386 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC13.26□□□□□ -0.29
Lig3P97386 Slc36a1-203ENSMUST00000108872 5264 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Lig3P97386 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lig3P97386 Slc39a6-201ENSMUST00000070726 3882 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lig3P97386 Fbxo18-201ENSMUST00000071564 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lig3P97386 Mrc2-201ENSMUST00000021038 3335 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Lig3P97386 Neat1-202ENSMUST00000174287 3004 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Lig3P97386 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC13.26□□□□□ -0.29
Lig3P97386 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lig3P97386 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC13.25□□□□□ -0.29
Lig3P97386 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Lig3P97386 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Lig3P97386 Gm40377-201ENSMUST00000204604 2015 ntBASIC13.25□□□□□ -0.29
Lig3P97386 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Lig3P97386 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC13.25□□□□□ -0.29
Lig3P97386 Gm6157-201ENSMUST00000199935 1897 ntBASIC13.25□□□□□ -0.29
Lig3P97386 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Lig3P97386 Limk2-201ENSMUST00000101638 3514 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
Lig3P97386 Tpra1-219ENSMUST00000203345 3359 ntTSL 5 BASIC13.25□□□□□ -0.29
Lig3P97386 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Lig3P97386 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Lig3P97386 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC13.25□□□□□ -0.29
Lig3P97386 Dcaf8-202ENSMUST00000191689 2754 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Lig3P97386 Gm27177-202ENSMUST00000183514 2703 ntBASIC13.25□□□□□ -0.29
Lig3P97386 Mageb17-ps-201ENSMUST00000117902 919 ntBASIC13.25□□□□□ -0.29
Lig3P97386 Gm13408-201ENSMUST00000119822 798 ntBASIC13.25□□□□□ -0.29
Lig3P97386 Gm13935-201ENSMUST00000121859 798 ntBASIC13.25□□□□□ -0.29
Lig3P97386 Gm8194-201ENSMUST00000159783 859 ntBASIC13.25□□□□□ -0.29
Lig3P97386 Gm22121-201ENSMUST00000175148 54 ntBASIC13.25□□□□□ -0.29
Lig3P97386 Gm45224-201ENSMUST00000208203 414 ntBASIC13.25□□□□□ -0.29
Lig3P97386 Gm45433-201ENSMUST00000209386 247 ntBASIC13.25□□□□□ -0.29
Lig3P97386 Gm18730-201ENSMUST00000218038 343 ntBASIC13.25□□□□□ -0.29
Lig3P97386 CT009486.1-201ENSMUST00000222047 661 ntTSL 3 BASIC13.25□□□□□ -0.29
Lig3P97386 AC113031.8-201ENSMUST00000227856 631 ntBASIC13.25□□□□□ -0.29
Lig3P97386 C1qb-201ENSMUST00000046384 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Lig3P97386 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Lig3P97386 Clec4b2-201ENSMUST00000088455 1174 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Lig3P97386 Galnt11-202ENSMUST00000114950 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Lig3P97386 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Lig3P97386 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Lig3P97386 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Lig3P97386 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC13.25□□□□□ -0.29
Lig3P97386 Astn1-209ENSMUST00000194369 3344 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Lig3P97386 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Lig3P97386 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Lig3P97386 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Lig3P97386 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Lig3P97386 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Lig3P97386 Zc3h18-205ENSMUST00000176629 3672 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Lig3P97386 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Lig3P97386 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC13.25□□□□□ -0.29
Lig3P97386 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Lig3P97386 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Lig3P97386 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Lig3P97386 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Lig3P97386 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC13.24□□□□□ -0.29
Lig3P97386 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC13.24□□□□□ -0.29
Lig3P97386 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC13.24□□□□□ -0.29
Lig3P97386 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Lig3P97386 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Lig3P97386 Zfp512-208ENSMUST00000202244 3045 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Lig3P97386 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Lig3P97386 Telo2-202ENSMUST00000115181 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Lig3P97386 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Lig3P97386 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Lig3P97386 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC13.24□□□□□ -0.29
Lig3P97386 Epb42-201ENSMUST00000023987 2695 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Lig3P97386 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Lig3P97386 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Lig3P97386 Gm10961-201ENSMUST00000106703 144 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Lig3P97386 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Lig3P97386 Sumo2-203ENSMUST00000117589 987 ntTSL 3 BASIC13.24□□□□□ -0.29
Lig3P97386 Gm13296-201ENSMUST00000117854 997 ntBASIC13.24□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 49.9 ms