Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC9.62□□□□□ -0.87
Hoxd3P09027 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hoxd3P09027 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC9.61□□□□□ -0.87
Hoxd3P09027 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC9.61□□□□□ -0.87
Hoxd3P09027 Etaa1-201ENSMUST00000076661 4185 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 Ccdc7a-202ENSMUST00000108747 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 Rims1-204ENSMUST00000097810 6362 ntAPPRIS ALT2 TSL 5 BASIC9.61□□□□□ -0.87
Hoxd3P09027 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC9.61□□□□□ -0.87
Hoxd3P09027 Gm7114-201ENSMUST00000190159 1789 ntBASIC9.61□□□□□ -0.87
Hoxd3P09027 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC9.61□□□□□ -0.87
Hoxd3P09027 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC9.61□□□□□ -0.87
Hoxd3P09027 Gm43045-201ENSMUST00000198725 2095 ntBASIC9.61□□□□□ -0.87
Hoxd3P09027 Gm2606-201ENSMUST00000100754 1002 ntBASIC9.61□□□□□ -0.87
Hoxd3P09027 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC9.61□□□□□ -0.87
Hoxd3P09027 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC9.61□□□□□ -0.87
Hoxd3P09027 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC9.61□□□□□ -0.87
Hoxd3P09027 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC9.61□□□□□ -0.87
Hoxd3P09027 Gm14024-201ENSMUST00000141964 560 ntTSL 2 BASIC9.61□□□□□ -0.87
Hoxd3P09027 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC9.61□□□□□ -0.87
Hoxd3P09027 Gm24845-201ENSMUST00000158034 109 ntBASIC9.61□□□□□ -0.87
Hoxd3P09027 Gm26361-201ENSMUST00000158868 186 ntBASIC9.61□□□□□ -0.87
Hoxd3P09027 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC9.61□□□□□ -0.87
Hoxd3P09027 Gm17058-201ENSMUST00000168951 928 ntTSL 5 BASIC9.61□□□□□ -0.87
Hoxd3P09027 Gm16434-202ENSMUST00000177712 618 ntAPPRIS ALT2 TSL 5 BASIC9.61□□□□□ -0.87
Hoxd3P09027 Gm6676-202ENSMUST00000178376 618 ntAPPRIS ALT2 TSL 5 BASIC9.61□□□□□ -0.87
Hoxd3P09027 1700015G11Rik-202ENSMUST00000185758 366 ntAPPRIS ALT2 TSL 3 BASIC9.61□□□□□ -0.87
Hoxd3P09027 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC9.61□□□□□ -0.87
Hoxd3P09027 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC9.61□□□□□ -0.87
Hoxd3P09027 Gm42433-201ENSMUST00000196806 940 ntBASIC9.61□□□□□ -0.87
Hoxd3P09027 Gm42947-201ENSMUST00000198230 675 ntTSL 2 BASIC9.61□□□□□ -0.87
Hoxd3P09027 S100a3-204ENSMUST00000200290 509 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC9.61□□□□□ -0.87
Hoxd3P09027 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC9.61□□□□□ -0.87
Hoxd3P09027 Gm7293-201ENSMUST00000216682 1007 ntBASIC9.61□□□□□ -0.87
Hoxd3P09027 Gm34662-202ENSMUST00000220753 603 ntTSL 5 BASIC9.61□□□□□ -0.87
Hoxd3P09027 AC134439.1-201ENSMUST00000220923 600 ntBASIC9.61□□□□□ -0.87
Hoxd3P09027 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC9.61□□□□□ -0.87
Hoxd3P09027 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 Obp1b-201ENSMUST00000088198 797 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC9.61□□□□□ -0.87
Hoxd3P09027 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 Gm14132-201ENSMUST00000117188 1719 ntBASIC9.61□□□□□ -0.87
Hoxd3P09027 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 Wnt5a-201ENSMUST00000063465 7010 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 Gm45743-201ENSMUST00000212701 2795 ntBASIC9.61□□□□□ -0.87
Hoxd3P09027 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC9.61□□□□□ -0.87
Hoxd3P09027 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC9.61□□□□□ -0.87
Hoxd3P09027 Gfod2-201ENSMUST00000013294 4352 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hoxd3P09027 Gm3052-202ENSMUST00000188254 2224 ntBASIC9.6□□□□□ -0.87
Hoxd3P09027 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
Hoxd3P09027 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hoxd3P09027 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
Hoxd3P09027 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC9.6□□□□□ -0.87
Hoxd3P09027 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hoxd3P09027 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
Hoxd3P09027 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
Hoxd3P09027 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hoxd3P09027 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hoxd3P09027 Gm43321-201ENSMUST00000198897 2409 ntBASIC9.6□□□□□ -0.87
Hoxd3P09027 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hoxd3P09027 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC9.6□□□□□ -0.87
Hoxd3P09027 Gm38376-201ENSMUST00000195493 2253 ntBASIC9.6□□□□□ -0.87
Hoxd3P09027 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC9.6□□□□□ -0.87
Hoxd3P09027 2610524H06Rik-201ENSMUST00000100850 947 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hoxd3P09027 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
Hoxd3P09027 Gm24231-201ENSMUST00000104315 133 ntBASIC9.6□□□□□ -0.87
Hoxd3P09027 Gm14444-202ENSMUST00000109070 1281 ntAPPRIS P1 TSL 3 BASIC9.6□□□□□ -0.87
Hoxd3P09027 Tmsb15b1-201ENSMUST00000113071 439 ntAPPRIS P1 TSL 2 BASIC9.6□□□□□ -0.87
Hoxd3P09027 Pom121l12-201ENSMUST00000117584 1039 ntAPPRIS P1 BASIC9.6□□□□□ -0.87
Hoxd3P09027 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
Hoxd3P09027 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC9.6□□□□□ -0.87
Hoxd3P09027 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Hoxd3P09027 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
Hoxd3P09027 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC9.6□□□□□ -0.87
Hoxd3P09027 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC9.6□□□□□ -0.87
Retrieved 100 of 76,532 protein–RNA pairs in 47 ms